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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0543100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Clathrin coat assembly protein AP47 (Clathrin coat associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoordinated protein 101).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.6 (0.0461) R2 : 0.335
β1 : -1.9 (0.169) R2dD : 0.191 R2D : 0.0779
β2 : 0.782 (0.112) R2dC : 0.0712 R2C : 0.0187
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.968 (0.0984) R2dN8 : 0.189 R2N8 : 0.0783
σ : 0.867
deviance : 342.59
__
_____
C
peak time of C : 2.06
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
317.84 0.838 4.58 -1.8 1.02 -0.868 1.12 -1.58 -0.969 4.27 80.72 668 -- --
323.04 0.837 4.58 -1.92 1.05 -0.855 0.881 -- -0.982 4.17 80.63 625 -- --
321.08 0.835 4.58 -1.83 0.984 -0.855 -- -1.37 -0.977 4.28 80.78 691 -- --
324.56 0.839 4.59 -1.92 1.1 -0.878 -- -- -0.99 4.24 80.27 606 -- --
344.49 0.864 4.59 -1.83 -- -1.02 -- -2.41 -0.925 -- 77 1117 -- --
340.26 0.865 4.6 -1.87 0.779 -- 0.783 -- -0.963 2 -- -- -- --
342.59 0.867 4.6 -1.9 0.782 -- -- -- -0.968 2.06 -- -- -- --
346.76 0.867 4.62 -2.03 -- -0.894 -- -- -1.02 -- 72.03 1188 -- --
418.47 0.953 4.54 -- 1.14 -0.848 -- -- -0.788 4.07 83 527 -- --
379.24 0.91 4.59 -1.86 -- -- -- -- -0.949 -- -- -- -- --
437.29 0.978 4.55 -- 0.746 -- -- -- -0.757 2.01 -- -- -- --
434.44 0.971 4.58 -- -- -1.27 -- -- -0.905 -- 88 1092 -- --
470.79 1.01 4.54 -- -- -- -- -- -0.743 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 312.02 wind 9.0 43200 > th dose dependent rect. 12 1
2 313.39 humidity 80.0 720 < th dose dependent rect. 18 13
3 313.76 temperature 20.0 90 > th dose independent rect. 6 21
4 313.77 wind 3.0 43200 > th dose independent rect. 1 3
7 313.90 wind 3.0 43200 < th dose independent rect. 2 1
12 314.51 wind 3.0 43200 < th dose independent rect. 1 3
15 314.81 atmosphere 1010.0 90 < th dose dependent rect. 3 2
17 314.90 wind 3.0 43200 > th dose independent rect. 2 1
19 314.97 humidity 70.0 720 > th dose independent rect. 19 8
21 315.21 wind 3.0 43200 > th dose independent rect. 23 7
22 315.21 humidity 80.0 720 < th dose independent rect. 18 20
23 315.25 wind 3.0 43200 < th dose independent rect. 23 7
25 315.35 wind 3.0 43200 > th dose independent rect. 1 5
29 315.40 wind 3.0 43200 < th dose independent rect. 1 5
32 315.56 wind 3.0 43200 < th dose independent rect. 5 1
34 315.59 wind 9.0 43200 > th dose independent rect. 12 1
35 315.61 temperature 30.0 720 > th dose dependent rect. 18 1
49 315.64 wind 1.0 90 < th dose independent rect. 4 1
52 315.70 wind 3.0 43200 > th dose independent rect. 23 5
57 315.76 humidity 90.0 90 > th dose dependent rect. 3 2
58 315.78 wind 3.0 43200 > th dose independent rect. 5 1
59 315.83 wind 3.0 43200 < th dose independent rect. 23 5
71 316.25 humidity 80.0 720 > th dose independent rect. 5 22
73 316.29 wind 1.0 90 < th dose dependent rect. 4 1
74 316.31 humidity 60.0 14400 > th dose independent rect. 16 2
82 316.54 humidity 80.0 1440 > th dose independent rect. 3 6
83 316.55 humidity 60.0 14400 < th dose independent rect. 16 2
84 316.61 wind 9.0 43200 < th dose dependent rect. 1 1
86 316.64 temperature 30.0 4320 > th dose dependent rect. 18 1
110 316.82 humidity 60.0 14400 > th dose independent rect. 16 12
111 316.82 humidity 60.0 14400 > th dose independent rect. 16 16
114 316.84 humidity 80.0 720 > th dose independent rect. 19 20
116 316.85 wind 9.0 43200 < th dose independent rect. 12 1
117 316.85 humidity 60.0 14400 > th dose independent rect. 16 6
122 316.85 wind 1.0 43200 > th dose dependent rect. 23 8
129 316.89 humidity 90.0 30 > th dose independent rect. 3 3
134 316.95 wind 5.0 43200 < th dose dependent rect. 23 7
139 316.99 humidity 60.0 14400 < th dose independent rect. 15 17
145 317.03 humidity 60.0 14400 < th dose independent rect. 15 6
167 317.11 wind 9.0 43200 < th dose dependent rect. 23 8
192 317.41 humidity 80.0 1440 < th dose independent rect. 3 6
230 317.60 atmosphere 1010.0 30 < th dose dependent rect. 3 4
233 317.63 radiation 1.0 90 < th dose dependent rect. 6 21
252 317.69 humidity 80.0 720 > th dose independent rect. 24 23
260 317.78 wind 9.0 43200 < th dose dependent rect. 23 5
269 317.84 wind 1.0 43200 > th dose dependent rect. 5 1
273 317.86 humidity 80.0 720 > th dose independent rect. 11 22
294 317.93 humidity 50.0 4320 < th dose dependent rect. 16 1
331 318.07 wind 3.0 43200 < th dose independent rect. 23 15
341 318.14 humidity 80.0 720 > th dose independent rect. 15 19
343 318.14 humidity 80.0 1440 < th dose dependent sin 11 NA
344 318.15 humidity 80.0 720 < th dose independent rect. 19 3
348 318.16 humidity 70.0 1440 > th dose dependent rect. 6 3
357 318.20 humidity 60.0 14400 < th dose independent sin 12 NA
359 318.20 humidity 90.0 1440 < th dose dependent rect. 4 4
371 318.25 wind 3.0 43200 < th dose independent rect. 1 13
372 318.25 wind 1.0 43200 > th dose dependent rect. 23 5
375 318.27 humidity 70.0 1440 > th dose dependent rect. 7 1
389 318.32 wind 5.0 14400 > th dose independent rect. 23 1
403 318.36 wind 1.0 43200 > th dose dependent rect. 4 3
425 318.41 radiation 1.0 90 < th dose dependent rect. 9 18
427 318.41 humidity 70.0 30 > th dose dependent rect. 7 20
436 318.45 wind 3.0 43200 > th dose independent rect. 23 15
452 318.46 humidity 80.0 720 > th dose independent no NA NA
476 318.50 humidity 80.0 30 > th dose independent rect. 7 20
478 318.50 wind 5.0 43200 < th dose dependent rect. 23 15
479 318.50 radiation 1.0 90 < th dose dependent rect. 12 15
489 318.55 humidity 80.0 720 < th dose independent rect. 17 16
496 318.57 wind 3.0 43200 > th dose independent rect. 1 13
518 318.64 wind 5.0 43200 < th dose dependent rect. 5 1
523 318.64 humidity 50.0 720 > th dose dependent rect. 17 9
526 318.66 temperature 30.0 720 > th dose independent rect. 18 1
545 318.68 radiation 30.0 14400 < th dose independent rect. 16 12
550 318.71 radiation 1.0 90 < th dose independent rect. 7 20
564 318.76 wind 1.0 43200 > th dose dependent rect. 1 2
567 318.78 humidity 80.0 720 < th dose independent rect. 11 22
573 318.79 wind 5.0 43200 < th dose dependent rect. 4 3
583 318.83 radiation 40.0 90 < th dose independent rect. 7 20
591 318.86 wind 3.0 90 < th dose dependent rect. 3 3
595 318.87 wind 9.0 43200 < th dose dependent rect. 4 3
596 318.88 atmosphere 995.0 90 > th dose independent rect. 3 16
602 318.90 wind 9.0 43200 < th dose dependent rect. 5 1
613 318.93 humidity 70.0 1440 > th dose dependent rect. 4 6
678 319.14 humidity 80.0 720 < th dose independent rect. 1 21
684 319.16 humidity 60.0 14400 > th dose independent sin 12 NA
696 319.18 temperature 15.0 90 > th dose independent rect. 3 16
708 319.21 radiation 30.0 14400 < th dose independent rect. 16 6
713 319.22 radiation 30.0 14400 < th dose independent rect. 16 1
734 319.30 humidity 80.0 720 < th dose independent rect. 8 23
743 319.32 radiation 1.0 90 < th dose independent rect. 9 18
756 319.35 radiation 30.0 14400 < th dose independent rect. 16 4
763 319.38 wind 3.0 43200 < th dose independent sin 7 NA
775 319.40 temperature 30.0 720 < th dose independent rect. 17 9
776 319.40 radiation 1.0 90 < th dose independent rect. 12 15
789 319.42 humidity 70.0 30 > th dose dependent rect. 10 17
797 319.45 humidity 80.0 720 > th dose independent sin 14 NA
801 319.45 atmosphere 1005.0 10 > th dose dependent rect. 2 2
834 319.54 temperature 20.0 90 > th dose dependent rect. 3 3
871 319.59 wind 1.0 43200 > th dose dependent rect. 23 15
873 319.60 wind 5.0 14400 < th dose independent rect. 23 1
876 319.60 precipitation 0.1 14400 < th dose independent rect. 11 6
878 319.60 wind 9.0 43200 > th dose dependent rect. 10 4
881 319.60 precipitation 0.1 14400 < th dose dependent rect. 11 6
886 319.62 precipitation 0.1 14400 > th dose independent rect. 11 6
889 319.63 precipitation 0.1 14400 < th dose independent rect. 13 4
893 319.63 precipitation 0.1 14400 < th dose dependent rect. 13 4
916 319.66 wind 3.0 43200 > th dose independent sin 7 NA
918 319.66 precipitation 0.1 14400 > th dose independent rect. 13 4
929 319.69 humidity 80.0 720 < th dose independent no NA NA