BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0543100 Os05g0543100|AK065138
(430 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0543100 Similar to Clathrin coat assembly protein AP47... 893 0.0
Os01g0703600 Similar to Mu1 adaptin 848 0.0
Os02g0690700 Clathrin adaptor complex, medium chain family ... 347 1e-95
Os07g0620300 Clathrin adaptor complex, medium chain family ... 265 5e-71
AK062296 175 6e-44
Os05g0383100 Clathrin adaptor complex, medium chain family ... 155 4e-38
>Os05g0543100 Similar to Clathrin coat assembly protein AP47 (Clathrin coat
associated protein AP47) (Golgi adaptor AP-1 47 kDa
protein) (HA1 47 kDa subunit) (Clathrin assembly protein
assembly protein complex 1 medium chain) (Uncoordinated
protein 101)
Length = 430
Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MAAGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGV 60
MAAGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGV
Sbjct: 1 MAAGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGV 60
Query: 61 SYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLD 120
SYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLD
Sbjct: 61 SYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLD 120
Query: 121 EMMDFGYPQYTEAMILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVV 180
EMMDFGYPQYTEAMILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVV
Sbjct: 121 EMMDFGYPQYTEAMILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVV 180
Query: 181 ESVNILVNSNGQIVRSDVIGELKMRTFLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLDD 240
ESVNILVNSNGQIVRSDVIGELKMRTFLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLDD
Sbjct: 181 ESVNILVNSNGQIVRSDVIGELKMRTFLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLDD 240
Query: 241 IKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVEKHSRSRIQITV 300
IKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVEKHSRSRIQITV
Sbjct: 241 IKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVEKHSRSRIQITV 300
Query: 301 KTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYM 360
KTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYM
Sbjct: 301 KTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYM 360
Query: 361 CRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYIT 420
CRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYIT
Sbjct: 361 CRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYIT 420
Query: 421 MAGEYELRLI 430
MAGEYELRLI
Sbjct: 421 MAGEYELRLI 430
>Os01g0703600 Similar to Mu1 adaptin
Length = 429
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/428 (94%), Positives = 417/428 (97%)
Query: 3 AGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGVSY 62
AGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKE D+E SPVV+DDAGV+Y
Sbjct: 2 AGAVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKEGDSEAHSPVVYDDAGVTY 61
Query: 63 MFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM 122
MFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM
Sbjct: 62 MFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEM 121
Query: 123 MDFGYPQYTEAMILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 182
MDFGYPQYTEA ILSEFIKTDAYRMEV+QRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES
Sbjct: 122 MDFGYPQYTEAKILSEFIKTDAYRMEVSQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 181
Query: 183 VNILVNSNGQIVRSDVIGELKMRTFLSGMPECKLGLNDRVLLEAQGRTTKGKAIDLDDIK 242
VNILVNSNGQIVRSDV+G LKMRT+LSGMPECKLGLNDRVLLEAQGR TKGKAIDLDDIK
Sbjct: 182 VNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLDDIK 241
Query: 243 FHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVEKHSRSRIQITVKT 302
FHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQ+EKHSRSRI++ VK
Sbjct: 242 FHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIEKHSRSRIELMVKA 301
Query: 303 RSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYMCR 362
RSQFKERSTATNVEIEVPVP D+TNPNIRTSMGSAAYAPERDAMVWK+KSFPGGK+YMCR
Sbjct: 302 RSQFKERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMCR 361
Query: 363 AEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 422
AEFSLPSIT+E+ PEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA
Sbjct: 362 AEFSLPSITAEEAAPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMA 421
Query: 423 GEYELRLI 430
GEYELRLI
Sbjct: 422 GEYELRLI 429
>Os02g0690700 Clathrin adaptor complex, medium chain family protein
Length = 438
Score = 347 bits (889), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 185/442 (41%), Positives = 276/442 (62%), Gaps = 26/442 (5%)
Query: 5 AVSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGVSYMF 64
A SA++ L+++G VL+ R YR DV + F ++ + E+ + V G S+++
Sbjct: 4 AASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTK---ELGTCPVRQIGGCSFLY 60
Query: 65 IQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFE-ELEEESLRDNFVVVYELLDEMM 123
++ +NV+++ N N A F+ V +FK YF +E+++R+NFV++YELLDE+M
Sbjct: 61 MRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIM 120
Query: 124 DFGYPQYTEAMILSEFIKTDAYRMEVTQRPP--------MAVTNAVSWRSEGIRYKKNEV 175
DFGYPQ IL +I + R + +P + VT AV WR EG+ YKKNEV
Sbjct: 121 DFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLMYKKNEV 180
Query: 176 FLDVVESVNILVNSNGQIVRSDVIGELKMRTFLSGMPECKLGLNDRVLLEAQGR-----T 230
FLD+VESVN+L++S G ++R DV G++ M+ FLSGMP+ KLGLND++ LE + +
Sbjct: 181 FLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKEAQLKSRPA 240
Query: 231 TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVEK 290
GK I+LDD+ FHQCV L RF +++T+SF+PPDG F+LM YR++ V V +++
Sbjct: 241 KSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKE 300
Query: 291 HSRSRIQITVKTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKI 350
R+R++I VK +S F + A V ++VPVP+ + + +T+ G A Y D++VWKI
Sbjct: 301 LGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKI 360
Query: 351 KSFPGGKEYMCRAEFSLPSITSEDGMPEKKA----PIRVKFEIPYFTVSGIQVRYLKIIE 406
+ FPG E AE L S M EKK+ PI+++F++P FT SG++VR+LK+ E
Sbjct: 361 RKFPGQTEATMSAEVELIST-----MGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKVWE 415
Query: 407 KSGYQALPWVRYITMAGEYELR 428
KSGY + WVRYIT AG YE+R
Sbjct: 416 KSGYNTVEWVRYITRAGSYEIR 437
>Os07g0620300 Clathrin adaptor complex, medium chain family protein
Length = 451
Score = 265 bits (677), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 155/452 (34%), Positives = 249/452 (55%), Gaps = 30/452 (6%)
Query: 6 VSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGVSYMFI 65
+S F+L +G +V+RDYRG+V AE FF K+ D +P V + GV+Y+ +
Sbjct: 2 ISQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYIHV 61
Query: 66 QHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDF 125
+ +F + + N + + +L L R+ V K Y L E+SLR NF++VYELLDE++DF
Sbjct: 62 KVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNFILVYELLDEVIDF 121
Query: 126 GYPQYT-----EAMILSEFIKTDAYR----------MEVTQR-PPMAVTNAVSWRSEGIR 169
GYPQ T ++ I +E I DA R M+ T+R P AVT +V G +
Sbjct: 122 GYPQTTSTEVLKSYIFNEPIMVDAGRLPPLGPAAMFMQGTKRMPGTAVTKSVVATEPGGK 181
Query: 170 YKKNEVFLDVVESVNILVNSNGQIVRSDVIGELKMRTFLSGMPECKLGLNDRVLLEAQGR 229
K+ E+F+D++E +++ +S+G I+ S++ G ++M+++L+G PE +L LN+ + + G
Sbjct: 182 -KREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGRTGS 240
Query: 230 TTK-------GKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLI 282
++ G A+ LDD FH+ V L F+ DRT+ IPPDG F +M YR++ + KP
Sbjct: 241 SSYDYRSSSGGGAVILDDCNFHESVHLDSFDIDRTLHLIPPDGEFAVMNYRITQEFKPPF 300
Query: 283 WVEAQVEKHSRSRIQITVKTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAA---- 338
V A +E+ SR ++ +K R+ F TA + +++PVP + + G+
Sbjct: 301 RVTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQMPVPSYTMRASFELEAGAVGQTTD 360
Query: 339 YAPERDAMVWKIKSFPGGKEYMCRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQ 398
+ + W +K GG E+ RA+ + S S + ++ P+ + F IP + S +Q
Sbjct: 361 FKEGSRRIEWNLKKIVGGSEHTLRAKLTF-SQESHGNLTKEAGPVNMNFTIPMYNTSKLQ 419
Query: 399 VRYLKIIEKS-GYQALPWVRYITMAGEYELRL 429
VRYL+I +KS Y WVRY+T A Y RL
Sbjct: 420 VRYLQIAKKSKTYNPYRWVRYVTQANSYVARL 451
>AK062296
Length = 310
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 164/296 (55%), Gaps = 15/296 (5%)
Query: 147 MEVTQR-PPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVIGELKMR 205
++ T+R P AVT +V G + K+ E+F+D++E +++ +S+G I+ S++ G ++M+
Sbjct: 17 LQGTKRMPGTAVTKSVVATEPGGK-KREEIFVDIIERISVTFSSSGYILTSEIDGTIQMK 75
Query: 206 TFLSGMPECKLGLNDRVLLEAQGRTTK-------GKAIDLDDIKFHQCVRLARFENDRTI 258
++L+G PE +L LN+ + + G ++ G A+ LDD FH+ V L F+ DRT+
Sbjct: 76 SYLTGNPEIRLALNEDLSIGRTGSSSYDYRSSSGGGAVILDDCNFHESVHLDSFDIDRTL 135
Query: 259 SFIPPDGSFDLMTYRLSTQVKPLIWVEAQVEKHSRSRIQITVKTRSQFKERSTATNVEIE 318
IPPDG F +M YR++ + KP V A +E+ SR ++ +K R+ F TA + ++
Sbjct: 136 HLIPPDGEFAVMNYRITQEFKPPFRVTALIEEAGPSRAEVLLKIRADFSANVTANTIVVQ 195
Query: 319 VPVPEDSTNPNIRTSMGSAA----YAPERDAMVWKIKSFPGGKEYMCRAEFSLPSITSED 374
+PVP + + G+ + + W +K GG E+ RA+ + S S
Sbjct: 196 MPVPSYTMRASFELEAGAVGQTTDFKEGSRRIEWNLKKIVGGSEHTLRAKLTF-SQESHG 254
Query: 375 GMPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKS-GYQALPWVRYITMAGEYELRL 429
+ ++ P+ + F IP + S +QVRYL+I +KS Y WVRY+T A Y RL
Sbjct: 255 NLTKEAGPVNMNFTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVARL 310
>Os05g0383100 Clathrin adaptor complex, medium chain family protein
Length = 417
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 118/447 (26%), Positives = 212/447 (47%), Gaps = 56/447 (12%)
Query: 6 VSALFLLDIKGRVLVWRDYRGDVSALQAER-----FFTKLLDKESD--AEVLSPVVHDDA 58
+ +FLL G V+V + ++A + +R F+ +L + ++VL VV +
Sbjct: 2 LQCVFLLSDSGEVMVEKQ----MTAHRVDRGICGWFWDYVLAHAAGDASKVLQVVV---S 54
Query: 59 GVSYMF-IQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFVVVYE 117
Y+F + N V L ++ + FL RV DV Y +L E+ ++DNFV+VY+
Sbjct: 55 PTHYLFQVYRNGVTFLACTQVEMPPLLAIEFLSRVADVLTDYLGDLNEDIIKDNFVLVYQ 114
Query: 118 LLDEMMDFGYPQYTEAMILSEFIK-----------TDAYRMEVTQRPPMAVTNAVSWRSE 166
+LDEMMD G+P TE IL E I + + P A + V WR+
Sbjct: 115 ILDEMMDNGFPLTTEPNILKEMIAPPNIVSKMLNVVTGKSSNLGNKLPDAAASFVPWRTT 174
Query: 167 GIRYKKNEVFLDVVESVNILVNSNGQIVRSDVIGELKMRTFLSGMPECKLGLNDRVLLEA 226
++ NEV++++VE ++ VN G +V+ + G++++ + L G+PE L ++ +
Sbjct: 175 VVKDASNEVYVNIVEELDACVNREGALVKCEAYGKIQVNSSLPGVPELTLSFSNPTI--- 231
Query: 227 QGRTTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEA 286
++D++FH CVR +E+++ +SF+PPDG F+LM+YR+ I+V+
Sbjct: 232 -----------INDVRFHPCVRFRPWESNQILSFVPPDGQFELMSYRVKKLKTTPIYVKP 280
Query: 287 QVEKHS-RSRIQITVKTRSQFKERSTATNVEIEVPVPEDSTNPNIRTSMGSAAYAPERDA 345
Q+ S R+ + V ++ T ++ ++ +P + ++ + G+ ++
Sbjct: 281 QLTSDSGNCRVNVMVGIKND--PGKTIDSITVQFRLPPLIASADLTANYGTVDILADQTC 338
Query: 346 MVWKIKSFPGGKEYMCRAEFSLPSITSEDGMPEKKA--PIRVKFEIPYFTVSGIQVRYLK 403
W I P K L E+G+ VKF+I +SG+Q+ L+
Sbjct: 339 F-WTIGQIPKDKAPSLSGNLRL-----EEGLTHLHTFPTFEVKFKIMGVALSGLQIDKLE 392
Query: 404 I--IEKSGYQALPWVRYITMAGEYELR 428
+ + Y+ R T AG YE+R
Sbjct: 393 VKNTPNAPYKGF---RAQTQAGRYEVR 416
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,684,829
Number of extensions: 550148
Number of successful extensions: 1169
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1153
Number of HSP's successfully gapped: 6
Length of query: 430
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 326
Effective length of database: 11,605,545
Effective search space: 3783407670
Effective search space used: 3783407670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)