BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0606900 Os07g0606900|016-059-F04
(366 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0606900 Heavy metal transport/detoxification protein d... 221 1e-57
Os03g0412300 Heavy metal transport/detoxification protein d... 118 6e-27
Os11g0629100 Heavy metal transport/detoxification protein d... 96 3e-20
AK105937 86 5e-17
Os03g0751600 Heavy metal transport/detoxification protein d... 84 1e-16
Os07g0682000 Heavy metal transport/detoxification protein d... 70 3e-12
Os04g0401000 Heavy metal transport/detoxification protein d... 69 4e-12
>Os07g0606900 Heavy metal transport/detoxification protein domain containing
protein
Length = 366
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/134 (82%), Positives = 111/134 (82%)
Query: 1 SHAPTTNPVRTYTIXXXXXXXXXXXXXXXXXXXXXXXGVQLGRSGGGDDEAGHTAAILMA 60
SHAPTTNPVRTYTI GVQLGRSGGGDDEAGHTAAILMA
Sbjct: 1 SHAPTTNPVRTYTILLPSSLLFTPPSSPLPSPATSSSGVQLGRSGGGDDEAGHTAAILMA 60
Query: 61 DKISTVVLNVDLECDRCYKKIRRVLCRIQDKANIKTISYDEKNNAVMVSGPFDADKVCKK 120
DKISTVVLNVDLECDRCYKKIRRVLCRIQDKANIKTISYDEKNNAVMVSGPFDADKVCKK
Sbjct: 61 DKISTVVLNVDLECDRCYKKIRRVLCRIQDKANIKTISYDEKNNAVMVSGPFDADKVCKK 120
Query: 121 LCCKAGRIIKDMQV 134
LCCKAGRIIKDMQV
Sbjct: 121 LCCKAGRIIKDMQV 134
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/143 (53%), Positives = 77/143 (53%)
Query: 224 QPFPAGMTQADLAPLLEKLKIAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGVAVPSIW 283
QPFPAGMTQADLAPLLEKLKIAK QGVAVPSIW
Sbjct: 224 QPFPAGMTQADLAPLLEKLKIAKQQQQQQQQAGPEPPRGEPIAPPMMMPAAQGVAVPSIW 283
Query: 284 PAPAGSLSCYSYNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHQGWYYG 343
PAPAGSLSCYSYNP DHQGWYYG
Sbjct: 284 PAPAGSLSCYSYNPAAYDQSSYYGGGGYGYGGGAFQAPAGYYGVAPPPAAPYDHQGWYYG 343
Query: 344 NRQPYYHQQQCYEDPNAGGCSVM 366
NRQPYYHQQQCYEDPNAGGCSVM
Sbjct: 344 NRQPYYHQQQCYEDPNAGGCSVM 366
>Os03g0412300 Heavy metal transport/detoxification protein domain containing
protein
Length = 248
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 66/76 (86%)
Query: 59 MADKISTVVLNVDLECDRCYKKIRRVLCRIQDKANIKTISYDEKNNAVMVSGPFDADKVC 118
MA K+ST+V+ VDLECDRCY+KIRRVLC++QDKA+IK ISYDEKNN V V+GPFDAD+V
Sbjct: 1 MAGKMSTIVMMVDLECDRCYRKIRRVLCKLQDKASIKAISYDEKNNTVTVAGPFDADEVS 60
Query: 119 KKLCCKAGRIIKDMQV 134
+LC AG++I D++V
Sbjct: 61 DRLCSSAGKVITDIRV 76
>Os11g0629100 Heavy metal transport/detoxification protein domain containing
protein
Length = 306
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 59/76 (77%)
Query: 59 MADKISTVVLNVDLECDRCYKKIRRVLCRIQDKANIKTISYDEKNNAVMVSGPFDADKVC 118
MA+KIST++L VDL C +CY KIR++LC +QD+ I TISYD KNN V+++G FD ++C
Sbjct: 1 MAEKISTLILKVDLACHKCYNKIRKILCNLQDQERITTISYDTKNNIVVIAGTFDPQRLC 60
Query: 119 KKLCCKAGRIIKDMQV 134
++ CK G+IIKD+ +
Sbjct: 61 CRIRCKGGKIIKDIHI 76
>AK105937
Length = 258
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 55/72 (76%), Gaps = 2/72 (2%)
Query: 65 TVVLNVDLECDRCYKKIRRVLCRIQDKAN--IKTISYDEKNNAVMVSGPFDADKVCKKLC 122
T+++ VDLEC+RCY KI RVL RI+DK I I +D K+N V+VSGPFD DK+ KLC
Sbjct: 6 TIIVKVDLECERCYAKIDRVLTRIRDKGEFVIDDIEFDVKHNKVIVSGPFDPDKLADKLC 65
Query: 123 CKAGRIIKDMQV 134
CKA +IIK++++
Sbjct: 66 CKACKIIKEIEI 77
>Os03g0751600 Heavy metal transport/detoxification protein domain containing
protein
Length = 237
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 55/72 (76%), Gaps = 2/72 (2%)
Query: 65 TVVLNVDLECDRCYKKIRRVLCRIQDKAN--IKTISYDEKNNAVMVSGPFDADKVCKKLC 122
T+++ VDLEC+RCY KI RVL RI+DK I I +D K+N V+VSGPFD DK+ KLC
Sbjct: 6 TIIVKVDLECERCYAKIDRVLTRIRDKGEFVIDDIEFDVKHNKVIVSGPFDPDKLADKLC 65
Query: 123 CKAGRIIKDMQV 134
CKA +IIK++++
Sbjct: 66 CKACKIIKEIEI 77
>Os07g0682000 Heavy metal transport/detoxification protein domain containing
protein
Length = 282
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 59 MADK-ISTVVLNVDLECDRCYKKIRRVLCRIQDKANIKTISYDEKNNAVMVSGPFDADKV 117
MADK ++++++ +LEC++C KKI++VL +++DK I I Y+ NN V++SG F +++
Sbjct: 1 MADKQMASLIIKANLECEKCCKKIQKVLNKLKDKEKIINIVYENSNNRVIISGHFKPEEL 60
Query: 118 CKKLCCKAGRIIKDMQV 134
KL CKA +IKD++
Sbjct: 61 AHKLRCKACGVIKDIEF 77
>Os04g0401000 Heavy metal transport/detoxification protein domain containing
protein
Length = 210
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 53/72 (73%)
Query: 63 ISTVVLNVDLECDRCYKKIRRVLCRIQDKANIKTISYDEKNNAVMVSGPFDADKVCKKLC 122
+ +V+ VDL+C RC KIR+VL ++++ I+ + YD KNN V+V G FD +K+CKK+
Sbjct: 1 MGILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIW 60
Query: 123 CKAGRIIKDMQV 134
CKAG+IIK++ +
Sbjct: 61 CKAGKIIKEILI 72
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,283,327
Number of extensions: 181240
Number of successful extensions: 587
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 582
Number of HSP's successfully gapped: 9
Length of query: 366
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 264
Effective length of database: 11,709,973
Effective search space: 3091432872
Effective search space used: 3091432872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)