BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0584000 Os07g0584000|AK073870
(110 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0584000 Similar to Yippee-like protein CG15309 229 2e-61
Os03g0193075 Similar to Yippee-like protein OJ1003C07.11 169 5e-43
AK068081 133 3e-32
Os12g0484700 Similar to Yippee-like protein CG15309 127 2e-30
Os11g0551800 Similar to Yippee-like protein 1 (DGL-1) (Mdgl-1) 126 3e-30
Os03g0698500 Similar to Yippee-like protein 3 116 3e-27
Os10g0369500 Yippee-like protein family protein 107 3e-24
>Os07g0584000 Similar to Yippee-like protein CG15309
Length = 110
Score = 229 bits (585), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60
MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL
Sbjct: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60
Query: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMMLKEG 110
LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMMLKEG
Sbjct: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMMLKEG 110
>Os03g0193075 Similar to Yippee-like protein OJ1003C07.11
Length = 110
Score = 169 bits (428), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 78/109 (71%), Positives = 91/109 (83%)
Query: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60
MGLLFV+ L G VFKC+ C VD+AS DAI+SKEF+G GRAYLFD VVN+ LGP EDR
Sbjct: 1 MGLLFVQRLDGNGVFKCRRCRVDAASKDAIISKEFQGSSGRAYLFDHVVNICLGPNEDRY 60
Query: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMMLKE 109
L+TGLHTVNDIYCSCCQ++LGWRYEKAY + QKYKEGK+ILE+ M K+
Sbjct: 61 LITGLHTVNDIYCSCCQQILGWRYEKAYDQSQKYKEGKFILERARMWKD 109
>AK068081
Length = 66
Score = 133 bits (334), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 63/66 (95%)
Query: 45 FDSVVNVSLGPREDRLLMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKH 104
S VNVSLGPREDRLLMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKH
Sbjct: 1 MTSRVNVSLGPREDRLLMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKH 60
Query: 105 MMLKEG 110
MMLKEG
Sbjct: 61 MMLKEG 66
>Os12g0484700 Similar to Yippee-like protein CG15309
Length = 109
Score = 127 bits (319), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 78/108 (72%)
Query: 3 LLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRLLM 62
++F+ L GP+V+ C C D I+SK F+GR+GRA+LF +NV +G +EDR LM
Sbjct: 1 MVFMAELVGPRVYSCCNCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNVVVGAKEDRQLM 60
Query: 63 TGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMMLKEG 110
TGLHTV DIYC+ C+ +LGW+YE+AY E QKYKEGK+I EK ++KE
Sbjct: 61 TGLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFIFEKSKIVKEN 108
>Os11g0551800 Similar to Yippee-like protein 1 (DGL-1) (Mdgl-1)
Length = 106
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 75/102 (73%)
Query: 9 LPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRLLMTGLHTV 68
L GP+V+ C C D I+SK F+GR+GRA+LF +N+S+GP+EDR LMTGLHTV
Sbjct: 4 LVGPRVYSCCHCRNHVCLHDDIISKAFQGRNGRAFLFSHAMNISMGPKEDRQLMTGLHTV 63
Query: 69 NDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMMLKEG 110
DIYC C+ +LGW+YE+A+ E QKYKEGK+I EK ++KE
Sbjct: 64 ADIYCRDCREVLGWKYERAFEESQKYKEGKFIFEKAKIVKEN 105
>Os03g0698500 Similar to Yippee-like protein 3
Length = 129
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Query: 1 MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHGRAYLFDSVVNVSLGPREDRL 60
MG LFV L G KV+ CK C I+SK F +HG+AYLF+ VVNV+ G +EDR+
Sbjct: 1 MGRLFVMHLEG-KVYSCKHCHTHLGLSSDIISKSFHCKHGKAYLFNKVVNVTSGVKEDRM 59
Query: 61 LMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEK 103
++TG+HTV+DI+C C ++GW+YE A+ + Q+YKEGK+ILE+
Sbjct: 60 MITGMHTVSDIFCVGCGSIVGWKYEAAHEKSQRYKEGKFILER 102
>Os10g0369500 Yippee-like protein family protein
Length = 107
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 53/62 (85%)
Query: 49 VNVSLGPREDRLLMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMMLK 108
VN+SLGP EDR LMTGLHTV DIYCSCCQ++LGWRYEKAY E +KYKEGK+ILEK M K
Sbjct: 45 VNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRYEKAYEESEKYKEGKFILEKARMWK 104
Query: 109 EG 110
E
Sbjct: 105 EA 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,862,712
Number of extensions: 141767
Number of successful extensions: 321
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 7
Length of query: 110
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 33
Effective length of database: 13,015,323
Effective search space: 429505659
Effective search space used: 429505659
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)