BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0572100 Os07g0572100|AK099435
(446 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0572100 Similar to Amine oxidase like protein (EC 1.4.... 871 0.0
Os06g0338200 Copper amine oxidase family protein 598 e-171
Os06g0338700 Copper amine oxidase family protein 463 e-130
Os04g0269600 Copper amine oxidase family protein 424 e-119
Os04g0476100 Similar to Peroxisomal copper-containing amine... 171 1e-42
Os04g0136200 164 1e-40
Os02g0593150 Copper amine oxidase family protein 74 1e-13
>Os07g0572100 Similar to Amine oxidase like protein (EC 1.4.3.6) (Copper amine
oxidase)
Length = 446
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/446 (95%), Positives = 424/446 (95%)
Query: 1 MHGCCIWLCCGNCRWANWEFHVGFDMRAGTVISLASVHXXXXXXXXXXXXXQVLYRGFVS 60
MHGCCIWLCCGNCRWANWEFHVGFDMRAGTVISLASVH QVLYRGFVS
Sbjct: 1 MHGCCIWLCCGNCRWANWEFHVGFDMRAGTVISLASVHDADADAGGARRRRQVLYRGFVS 60
Query: 61 EIFVPYMDPVEEWYYRTFLDAGEYGLGLWAFPLQPGGDCPANAAYLDGHYSGQDGRPVEA 120
EIFVPYMDPVEEWYYRTFLDAGEYGLGLWAFPLQPGGDCPANAAYLDGHYSGQDGRPVEA
Sbjct: 61 EIFVPYMDPVEEWYYRTFLDAGEYGLGLWAFPLQPGGDCPANAAYLDGHYSGQDGRPVEA 120
Query: 121 RNMICVFERYSGDVAWRHTEAGFPNQLITEVRPDVSLVARMVVSAGNYDYILDWEFKTSG 180
RNMICVFERYSGDVAWRHTEAGFPNQLITEVRPDVSLVARMVVSAGNYDYILDWEFKTSG
Sbjct: 121 RNMICVFERYSGDVAWRHTEAGFPNQLITEVRPDVSLVARMVVSAGNYDYILDWEFKTSG 180
Query: 181 SIKLVVSLTGLLEVKATAYAHADEVAQDAHGTLVAENTIAVYHDHYVTYHLDLDVDGTNN 240
SIKLVVSLTGLLEVKATAYAHADEVAQDAHGTLVAENTIAVYHDHYVTYHLDLDVDGTNN
Sbjct: 181 SIKLVVSLTGLLEVKATAYAHADEVAQDAHGTLVAENTIAVYHDHYVTYHLDLDVDGTNN 240
Query: 241 SFVKNIVTAVVRXXXXXXXXXTPRRSYWTVRREVAEREADGQVDLGGGAPADLVFVNPGK 300
SFVKNIVTAVVR TPRRSYWTVRREVAEREADGQVDLGGGAPADLVFVNPGK
Sbjct: 241 SFVKNIVTAVVRDADADAAADTPRRSYWTVRREVAEREADGQVDLGGGAPADLVFVNPGK 300
Query: 301 KTRMGNEVGYRVVPGGAMAASVLADDDFPQRRAAYCKKQVRVTPYSRSEKWASGLYADQS 360
KTRMGNEVGYRVVPGGAMAASVLADDDFPQRRAAYCKKQVRVTPYSRSEKWASGLYADQS
Sbjct: 301 KTRMGNEVGYRVVPGGAMAASVLADDDFPQRRAAYCKKQVRVTPYSRSEKWASGLYADQS 360
Query: 361 TGGDGLAAWSERDRAIRGEDIVLWYTVGLHHVPYQEDFPVMPTLSGGLELRPSNFFERNP 420
TGGDGLAAWSERDRAIRGEDIVLWYTVGLHHVPYQEDFPVMPTLSGGLELRPSNFFERNP
Sbjct: 361 TGGDGLAAWSERDRAIRGEDIVLWYTVGLHHVPYQEDFPVMPTLSGGLELRPSNFFERNP 420
Query: 421 LLTTMPIGHGRPLVNCSCAGGDSISR 446
LLTTMPIGHGRPLVNCSCAGGDSISR
Sbjct: 421 LLTTMPIGHGRPLVNCSCAGGDSISR 446
>Os06g0338200 Copper amine oxidase family protein
Length = 698
Score = 598 bits (1542), Expect = e-171, Method: Compositional matrix adjust.
Identities = 291/432 (67%), Positives = 342/432 (79%), Gaps = 9/432 (2%)
Query: 13 CRWANWEFHVGFDMRAGTVISLASVHXXXXXXXXXXXXXQVLYRGFVSEIFVPYMDPVEE 72
+WANWEFHVGFDMRAGTVISLASV+ +VLYRGFVSEIFVPYMDP EE
Sbjct: 274 VKWANWEFHVGFDMRAGTVISLASVNDTDAGGLKR----RVLYRGFVSEIFVPYMDPEEE 329
Query: 73 WYYRTFLDAGEYGLGLWAFPLQPGGDCPANAAYLDGHYSGQDGRPVEARNMICVFERYSG 132
WY+ TF DAGEYGLG A LQ G DCPANA Y+DG+Y+G DG+PV+A ++IC+FERY+G
Sbjct: 330 WYFHTFTDAGEYGLGALASQLQRGADCPANAVYMDGYYAGSDGKPVKAEDVICLFERYAG 389
Query: 133 DVAWRHTEAGFPNQLITEVRPDVSLVARMVVSAGNYDYILDWEFKTSGSIKLVVSLTGLL 192
DVAWRHT L +EVRPDV+LV RMVV+ GNYDY LDWEFKT GSIK+VVSL+G+L
Sbjct: 390 DVAWRHTNGIGLGGLFSEVRPDVTLVVRMVVTVGNYDYTLDWEFKTVGSIKIVVSLSGIL 449
Query: 193 EVKATAYAHADEVAQDAHGTLVAENTIAVYHDHYVTYHLDLDVDGTNNSFVK-NIVTAVV 251
E+KA Y H D++ +D HGTL+ ENTI VYHDH+VTYHLDLD+DGT NSF+K NIV
Sbjct: 450 EMKAINYTHVDQIREDTHGTLITENTIGVYHDHFVTYHLDLDIDGTRNSFIKNNIVPKCN 509
Query: 252 RXXXXXXXXXTPRRSYWTVRREVAEREADGQVDLGGGAPADLVFVNPGKKTRMGNEVGYR 311
TPRRSYWTV EVAE EA+GQV++ APADL+FVNP KK ++GNEVGYR
Sbjct: 510 TGVRATGGAPTPRRSYWTVLYEVAETEAEGQVNI-NSAPADLLFVNPSKKMKIGNEVGYR 568
Query: 312 VVPGGAMAASVLADDDFPQRRAAYCKKQVRVTPYSRSEKWASGLYADQSTGGDGLAAWSE 371
++P GA A S+LADDD+P+RRA+Y KKQV VTPY++SEKWASGLYA+QSTG D LAAWS+
Sbjct: 569 LIPTGATATSLLADDDYPERRASYTKKQVWVTPYNKSEKWASGLYAEQSTGDDNLAAWSK 628
Query: 372 RDRAIRGEDIVLWYTVGLHHVPYQEDFPVMPTLSGGLELRPSNFFERNPLLTTMPIGHGR 431
R+R+I+ EDIVLWYTVGLHHVPYQEDFPVMPT+SG LE+RPSNFFERNPL+ T P +
Sbjct: 629 RNRSIKDEDIVLWYTVGLHHVPYQEDFPVMPTISGALEVRPSNFFERNPLIRTKPPENSP 688
Query: 432 PLVNCSCAGGDS 443
NCSC+ G S
Sbjct: 689 ---NCSCSIGGS 697
>Os06g0338700 Copper amine oxidase family protein
Length = 594
Score = 463 bits (1191), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/338 (65%), Positives = 263/338 (77%), Gaps = 6/338 (1%)
Query: 13 CRWANWEFHVGFDMRAGTVISLASVHXXXXXXXXXXXXXQVLYRGFVSEIFVPYMDPVEE 72
RWANWEFHVGFDMRAGTVIS+ASVH +VLYRGF SEIFVPYMDP EE
Sbjct: 263 VRWANWEFHVGFDMRAGTVISMASVHDADADLWR-----RVLYRGFASEIFVPYMDPEEE 317
Query: 73 WYYRTFLDAGEYGLGLWAFPLQPGGDCPANAAYLDGHYSGQDGRPVEARNMICVFERYSG 132
WY+ TF+DAGEYGLG+ A PLQP D PANAAY+DG+Y DG+PV++ N+ICVFERY+G
Sbjct: 318 WYFHTFMDAGEYGLGVSAVPLQPEADYPANAAYMDGYYVDADGKPVKSENIICVFERYAG 377
Query: 133 DVAWRHTEAGFPNQLITEVRPDVSLVARMVVSAGNYDYILDWEFKTSGSIKLVVSLTGLL 192
D+AWRHT P ITEVRPDV+LV RMVV+ GNYDY LDWEFKT GSIK VVSL+G+L
Sbjct: 378 DIAWRHTGVAGPIAPITEVRPDVTLVVRMVVTVGNYDYTLDWEFKTVGSIKTVVSLSGIL 437
Query: 193 EVKATAYAHADEVAQDAHGTLVAENTIAVYHDHYVTYHLDLDVDGTNNSFVKNIVTAVVR 252
E+KAT Y H D++ D HGTL+AENT+ VYHDH++TYHLDLD+DGT NSF+KN +
Sbjct: 438 EMKATNYTHVDQIRDDIHGTLIAENTVGVYHDHFITYHLDLDIDGTKNSFIKNTIIPKRN 497
Query: 253 XXXXXXXXXTPRRSYWTVRREVAEREADGQVDLGGGAPADLVFVNPGKKTRMGNEVGYRV 312
RSYWTV EVAE EA+GQV++ GAPADL+FVNP KKT++GNEVGYR+
Sbjct: 498 TGVRATGGAPTPRSYWTVLYEVAETEAEGQVNI-NGAPADLLFVNPSKKTKVGNEVGYRL 556
Query: 313 VPGGAMAASVLADDDFPQRRAAYCKKQVRVTPYSRSEK 350
+P GA A S+LA++D+PQRRA+Y KKQV VTPY++SEK
Sbjct: 557 IPAGATATSLLANNDYPQRRASYTKKQVWVTPYNKSEK 594
>Os04g0269600 Copper amine oxidase family protein
Length = 702
Score = 424 bits (1090), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/393 (52%), Positives = 263/393 (66%), Gaps = 9/393 (2%)
Query: 53 VLYRGFVSEIFVPYMDPVEEWYYRTFLDAGEYGLGLWAFPLQPGGDCPANAAYLDGHYSG 112
V+Y+G SE+FVPYMDP E WY++T++DAGEYG GL A PL P DCP +A YLD +
Sbjct: 317 VMYKGMASELFVPYMDPTEAWYFKTYMDAGEYGFGLQAMPLVPLNDCPRHARYLDAVFVA 376
Query: 113 QDGRPVEARNMICVFERYSGDVAWRHTEAGFPNQLITEVRPDVSLVARMVVSAGNYDYIL 172
DGRP NMICVFERY+GD+AWRH+E+ I E RP V+LVARM S NYDYI+
Sbjct: 377 ADGRPYVRENMICVFERYAGDIAWRHSESPITGMDIRESRPKVTLVARMAASVANYDYIV 436
Query: 173 DWEFKTSGSIKLVVSLTGLLEVKATAYAHADEVAQ--DAHGTLVAENTIAVYHDHYVTYH 230
DWEF+ G +++ V L+G+L VK T Y+H ++V Q + +GTL++EN I V HDH+VT+
Sbjct: 437 DWEFQMDGLVRIKVGLSGILMVKGTQYSHMNQVHQNDNMYGTLLSENVIGVIHDHFVTFR 496
Query: 231 LDLDVDGTNNSFVKNIVTAVVRXXXXXXXXXTPRRSYWTVRREVAEREADGQVDLGGGAP 290
LD+D+DG +NSFVK V +PR+SY R VA E D QV L P
Sbjct: 497 LDMDIDGADNSFVK-----VAMARQNTGAGESPRKSYLKATRHVARTEKDAQVRLKLYEP 551
Query: 291 ADLVFVNPGKKTRMGNEVGYRVVPGGAMAASVLADDDFPQRRAAYCKKQVRVTPYSRSEK 350
++ VNP KKTR+GN VGY+VVP G AAS+L +D PQ+R A+ Q+ VTPY+++E+
Sbjct: 552 SEFHIVNPMKKTRVGNPVGYKVVPAGT-AASLLDPEDPPQKRGAFTNNQIWVTPYNKTEE 610
Query: 351 WASGLYADQSTGGDGLAAWSERDRAIRGEDIVLWYTVGLHHVPYQEDFPVMPTLSGGLEL 410
WA GL+ QS G D LA WSERDR I +D+VLWYT+G HHVP QEDFP+MPT+S +L
Sbjct: 611 WAGGLFVYQSKGEDTLATWSERDRPIENKDLVLWYTLGFHHVPCQEDFPIMPTVSSSFDL 670
Query: 411 RPSNFFERNPLLTTMPIGHGRPLVNCSCAGGDS 443
+P NFFE NP+L P L C+ A S
Sbjct: 671 KPVNFFESNPILGQRPTQEND-LPVCAAAATTS 702
>Os04g0476100 Similar to Peroxisomal copper-containing amine oxidase
Length = 518
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 177/414 (42%), Gaps = 21/414 (5%)
Query: 15 WANWEFHVGFDMRAGTVI-SLASVHXXXXXXXXXXXXXQVLYRGFVSEIFVPYMDPVEEW 73
W W F +GF + G VI S+A V + +R E+ VPY DP E
Sbjct: 100 WQKWNFRIGFTPKEGLVIYSVAYV-------DGSRGRRPIAHRLSFVEMVVPYGDPNEPH 152
Query: 74 YYRTFLDAGEYGLGLWAFPLQPGGDCPANAAYLDGHYSGQDGRPVEARNMICVFERYSGD 133
Y + DAGE GLG A L+ G DC Y D H++ G N +C+ E G
Sbjct: 153 YRKNAFDAGEDGLGKNAHSLKRGCDCLGFIKYFDAHFTNFTGGVETIENCVCLHEEDHG- 211
Query: 134 VAWRHTEAGFPNQLITEVRPDVSLVARMVVSAGNYDYILDWEFKTSGSIKLVVSLTGLLE 193
+ W+H + + EVR L + + NY+Y W F G I+ V LTG+L
Sbjct: 212 ILWKHQDW---RTGLAEVRRSRRLTVSFICTVANYEYGFYWHFYQDGKIEAEVKLTGILS 268
Query: 194 VKATAYAHADEVAQDAHGTLVAENTIAVYHDHYVTYHLDLDVDGTNNSFVKNIVTAVVRX 253
+ A + + +GT +A A H H+ +D+ VD N N V V
Sbjct: 269 LGALMPGESRK-----YGTTIAPGLYAPVHQHFFVARMDMAVDCKPNE-AHNQVVEVNVK 322
Query: 254 XXXXXXXXTPRRSYWTVRREVAEREADGQVDLGGGAPADLVFVNPGKKTRMGNEVGYRVV 313
+++ ++ + E D + + N R G GYR+V
Sbjct: 323 VENAGTHNVHNNAFYA-EEKLLKSELQAMRDCDPSSARHWIVRNTRAVNRTGQPTGYRLV 381
Query: 314 PGGAMAASVLADDDFPQRRAAYCKKQVRVTPYSRSEKWASGLYADQSTG-GDGLAAWSER 372
PG L + F RRA + K + VT Y E + G + +Q+ +GLA W ++
Sbjct: 382 PGSNCLPLALPEAKF-LRRAGFLKHNLWVTQYKSDEVFPGGEFPNQNPRIHEGLATWVKK 440
Query: 373 DRAIRGEDIVLWYTVGLHHVPYQEDFPVMPTLSGGLELRPSNFFERNPLLTTMP 426
DR + DIVLWY GL H+P ED+PVMP G L P FF +P + P
Sbjct: 441 DRPLEETDIVLWYVFGLTHIPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDVPP 494
>Os04g0136200
Length = 819
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/399 (29%), Positives = 170/399 (42%), Gaps = 21/399 (5%)
Query: 15 WANWEFHVGFDMRAGTVI-SLASVHXXXXXXXXXXXXXQVLYRGFVSEIFVPYMDPVEEW 73
W W F +GF + G V+ S+A V + +R E+ VPY DP E
Sbjct: 385 WQKWNFRIGFTPKEGLVLHSVAYVDGNRGRR-------PIAHRLSFVEMVVPYGDPNEPH 437
Query: 74 YYRTFLDAGEYGLGLWAFPLQPGGDCPANAAYLDGHYSGQDGRPVEARNMICVFERYSGD 133
Y + DAGE GLG A L+ G DC Y D H++ G N +C+ E G
Sbjct: 438 YRKNAFDAGEDGLGKNANSLKKGCDCLGVIKYFDAHFTNFTGGVETIENAVCLHEEDHG- 496
Query: 134 VAWRHTEAGFPNQLITEVRPDVSLVARMVVSAGNYDYILDWEFKTSGSIKLVVSLTGLLE 193
+ W+H + + EVR L + + NY+Y W F G I+ V LTG+L
Sbjct: 497 ILWKHRDW---RTGLAEVRRSRRLTVSFICTIANYEYGFYWHFYQDGKIEAEVKLTGILS 553
Query: 194 VKATAYAHADEVAQDAHGTLVAENTIAVYHDHYVTYHLDLDVDGTNNSFVKNIVTAVVRX 253
V A Q +GT +A + A H H+ +D+ VD N +V V
Sbjct: 554 VGALMPGE-----QRKYGTTIAPSLYAPVHQHFFVTRMDMAVDCKPNEAYNQVVEVNVNT 608
Query: 254 XXXXXXXXTPRRSYWTVRREVAEREADGQVDLGGGAPADLVFVNPGKKTRMGNEVGYRVV 313
Y ++ + E D + + N R G GY+++
Sbjct: 609 ECAGPNNMHNNAFY--AEEKLLKSELQAMRDCHPSSARYWIVRNTRTVNRTGQPTGYKLI 666
Query: 314 PGGAMAASVLADDDFPQRRAAYCKKQVRVTPYSRSEKWASGLYADQSTG-GDGLAAWSER 372
PG L + F RRA + K + VT Y E + G + +Q+ +GLA W ++
Sbjct: 667 PGSNCLPLALPEAKF-LRRAGFLKHNLWVTSYKNDEMYPGGEFPNQNPRINEGLATWVKQ 725
Query: 373 DRAIRGEDIVLWYTVGLHHVPYQEDFPVMPTLSGGLELR 411
DR++ +IVLWY G+ HVP ED+PVMP G L+
Sbjct: 726 DRSLEETNIVLWYVFGVTHVPRLEDWPVMPVEHIGFMLK 764
>Os02g0593150 Copper amine oxidase family protein
Length = 311
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 303 RMGNEVGYRVVPGGAMAASVLADDDFPQRRAAYCKKQVRVTPYSRSEKWASGLYADQSTG 362
R G GY++VPG + L + F RRA + K + VT + E + G + +Q+
Sbjct: 36 RTGQPTGYKLVPGSSCLPLALPEAKF-LRRAGFLKHNLWVTSFKNDEMFPGGEFPNQNPR 94
Query: 363 -GDGLAAWSERDRAIRGEDIVLWYTVGLHHVPYQEDFPVMP 402
+GLA W ++DR++ ++VLWY G+ H+P ED+PVMP
Sbjct: 95 INEGLATWVKKDRSLEETNLVLWYVFGITHIPRLEDWPVMP 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,937,836
Number of extensions: 750058
Number of successful extensions: 1326
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1304
Number of HSP's successfully gapped: 7
Length of query: 446
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 342
Effective length of database: 11,605,545
Effective search space: 3969096390
Effective search space used: 3969096390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)