Os06g0338200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Copper amine oxidase family protein.
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Os06g0338200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Copper amine oxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 487.33 | 1.04 | 8.27 | -3.3 | 1.86 | -1.84 | -2.3 | -0.619 | -0.385 | 16.6 | 73 | 1246 | -- | -- |
| 488.14 | 1.03 | 8.27 | -3.38 | 1.85 | -1.86 | -2.41 | -- | -0.397 | 16.6 | 73 | 1243 | -- | -- |
| 500.89 | 1.04 | 8.27 | -3.29 | 1.85 | -1.86 | -- | -0.941 | -0.389 | 16.5 | 72.87 | 1243 | -- | -- |
| 502.83 | 1.04 | 8.29 | -3.42 | 1.85 | -1.91 | -- | -- | -0.428 | 16.5 | 72.66 | 1243 | -- | -- |
| 600.6 | 1.14 | 8.22 | -3.3 | -- | -1.7 | -- | 0.8 | -0.184 | -- | 73.99 | 388 | -- | -- |
| 608.89 | 1.16 | 8.23 | -3.05 | 1.63 | -- | -2.65 | -- | -0.172 | 17.2 | -- | -- | -- | -- |
| 626.53 | 1.17 | 8.24 | -3.05 | 1.62 | -- | -- | -- | -0.184 | 17.2 | -- | -- | -- | -- |
| 600.82 | 1.14 | 8.23 | -3.21 | -- | -1.7 | -- | -- | -0.303 | -- | 73.52 | 387 | -- | -- |
| 766.55 | 1.29 | 8.22 | -- | 1.92 | -2.59 | -- | -- | -0.0628 | 16.4 | 85 | 1317 | -- | -- |
| 762.99 | 1.29 | 8.22 | -3.11 | -- | -- | -- | -- | -0.225 | -- | -- | -- | -- | -- |
| 871.88 | 1.38 | 8.16 | -- | 1.67 | -- | -- | -- | 0.155 | 17.2 | -- | -- | -- | -- |
| 837.37 | 1.35 | 8.15 | -- | -- | -1.74 | -- | -- | 0.0436 | -- | 83 | 479 | -- | -- |
| 1017.69 | 1.49 | 8.14 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 475.42 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 15 | 477.17 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 41 | 479.61 | humidity | 70 | 1440 | < th | dose independent | sin | 14 | NA |
| 44 | 479.78 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 50 | 480.71 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 68 | 481.48 | humidity | 80 | 1440 | < th | dose dependent | sin | 15 | NA |
| 78 | 482.27 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 82 | 482.35 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 117 | 483.86 | humidity | 70 | 1440 | > th | dose independent | sin | 14 | NA |
| 138 | 484.37 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 140 | 484.38 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 176 | 485.53 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 182 | 485.64 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 183 | 485.65 | humidity | 50 | 1440 | > th | dose dependent | sin | 18 | NA |
| 192 | 485.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 257 | 487.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 259 | 487.41 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 265 | 487.50 | humidity | 50 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 267 | 487.52 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 270 | 487.54 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 282 | 487.68 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 362 | 489.25 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 368 | 489.31 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 393 | 489.76 | humidity | 90 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 422 | 489.98 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 503 | 490.55 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 657 | 491.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 662 | 491.79 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 674 | 491.86 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 681 | 491.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 697 | 492.04 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 718 | 492.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 766 | 492.46 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 816 | 492.69 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 819 | 492.71 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 845 | 492.81 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 907 | 493.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 927 | 493.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 14 |
| 942 | 493.34 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 981 | 493.50 | temperature | 30 | 1440 | > th | dose dependent | sin | 13 | NA |