Os04g0476100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxisomal copper-containing amine oxidase.
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Os04g0476100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxisomal copper-containing amine oxidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.49 | 0.576 | 11.8 | 1.49 | 1.14 | -2.06 | -0.556 | 0.471 | 0.702 | 14.8 | 8.913 | 236 | 17.2 | 22.1 |
| 150.54 | 0.571 | 11.9 | 1.45 | 1.14 | -2.05 | -0.48 | -- | 0.684 | 14.9 | 8.644 | 237 | 17.1 | 22.2 |
| 151.13 | 0.573 | 11.9 | 1.45 | 1.15 | -2.08 | -- | 0.149 | 0.694 | 14.9 | 7.048 | 238 | 17 | 22.4 |
| 151.07 | 0.572 | 11.9 | 1.42 | 1.13 | -2.09 | -- | -- | 0.671 | 14.8 | 6.245 | 238 | 17 | 22.4 |
| 200.12 | 0.659 | 11.9 | 2.15 | -- | -1.8 | -- | 1.82 | 0.608 | -- | 7.566 | 378 | 16.5 | 20.9 |
| 201.31 | 0.665 | 11.9 | 1.05 | 1.03 | -- | -0.63 | -- | 0.398 | 15.9 | -- | -- | -- | -- |
| 202.46 | 0.666 | 11.9 | 1.05 | 1.02 | -- | -- | -- | 0.395 | 15.9 | -- | -- | -- | -- |
| 176.87 | 0.619 | 11.9 | 1.41 | -- | -1.48 | -- | -- | 0.625 | -- | 8.023 | 472 | 15.9 | 19.5 |
| 199.64 | 0.658 | 11.9 | -- | 0.985 | -1.6 | -- | -- | 0.462 | 14.7 | 5.432 | 219 | 17.4 | 22 |
| 260 | 0.753 | 11.9 | 1 | -- | -- | -- | -- | 0.367 | -- | -- | -- | -- | -- |
| 231.28 | 0.711 | 12 | -- | 1 | -- | -- | -- | 0.278 | 15.9 | -- | -- | -- | -- |
| 210.69 | 0.676 | 11.9 | -- | -- | -1.71 | -- | -- | 0.397 | -- | 3.152 | 503 | 15.6 | 18.9 |
| 286.57 | 0.79 | 11.9 | -- | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 151.22 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 2 | 153.24 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 50 | 161.09 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 56 | 161.53 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 67 | 161.73 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 73 | 161.94 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 81 | 162.31 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 14 | 7 |
| 89 | 162.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 91 | 162.50 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 190 | 163.35 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 221 | 163.63 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 224 | 163.64 | radiation | 1.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 228 | 163.70 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 13 |
| 230 | 163.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 236 | 163.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 251 | 163.83 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 261 | 163.87 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 278 | 163.94 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 14 | 4 |
| 281 | 163.94 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 318 | 164.11 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 319 | 164.12 | radiation | 1.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 331 | 164.21 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 366 | 164.30 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 370 | 164.34 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 16 |
| 384 | 164.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 15 |
| 387 | 164.40 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 410 | 164.42 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 438 | 164.49 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 469 | 164.62 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 500 | 164.89 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 539 | 165.09 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 540 | 165.09 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 557 | 165.25 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 560 | 165.30 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 597 | 165.59 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 604 | 165.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 622 | 165.78 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 625 | 165.78 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 628 | 165.79 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 631 | 165.80 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 633 | 165.80 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 638 | 165.82 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 639 | 165.82 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 649 | 165.84 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 670 | 165.90 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 713 | 166.16 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 741 | 166.39 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 751 | 166.45 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 763 | 166.54 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 782 | 166.67 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 796 | 166.75 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 843 | 167.00 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 9 |
| 858 | 167.05 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 859 | 167.05 | temperature | 20.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 866 | 167.08 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 935 | 167.39 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 937 | 167.39 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 15 | 6 |
| 943 | 167.40 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 988 | 167.57 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |