BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0467500 Os07g0467500|AK066400
(269 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0467500 Conserved hypothetical protein 324 3e-89
Os02g0678800 Similar to Transcription activator 139 2e-33
Os02g0701300 Similar to Transcription activator GRF2 (Fragm... 119 3e-27
Os03g0729500 Growth-regulating factor 6 114 1e-25
Os02g0776900 Growth-regulating factor 1 107 1e-23
Os06g0116200 Similar to Transcription activator GRF3 (Fragm... 104 8e-23
Os06g0204800 94 1e-19
Os11g0551900 Similar to Growth-regulating factor 8 90 1e-18
Os03g0674700 Similar to Growth-regulating factor 3 86 3e-17
>Os07g0467500 Conserved hypothetical protein
Length = 269
Score = 324 bits (831), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 165/242 (68%), Positives = 165/242 (68%)
Query: 1 MAAEGEAKKDSASNPPXXXXXXXXXXXXXDSSLXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MAAEGEAKKDSASNPP DSSL
Sbjct: 1 MAAEGEAKKDSASNPPGGGGGGGGGEEEEDSSLAVGEAAVGVGEAGGGGGGGEKADREEE 60
Query: 61 XXXXXXXXXXXCKXXXXXXXXXXXXXXXXXXXXXXXXXXMKALVESVPVGAGAAFTAMQL 120
CK MKALVESVPVGAGAAFTAMQL
Sbjct: 61 EGKEDVEEGGVCKDLVLVEDAVPVEDPEEAAATAALQEEMKALVESVPVGAGAAFTAMQL 120
Query: 121 QELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTLMGLATLCLDFGKNPE 180
QELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTLMGLATLCLDFGKNPE
Sbjct: 121 QELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTLMGLATLCLDFGKNPE 180
Query: 181 PEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVEDDEPDSTSGSKPASGK 240
PEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVEDDEPDSTSGSKPASGK
Sbjct: 181 PEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQLVVEDDEPDSTSGSKPASGK 240
Query: 241 AT 242
AT
Sbjct: 241 AT 242
>Os02g0678800 Similar to Transcription activator
Length = 211
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
Query: 115 FTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTL--MGLATLC 172
T MQ QELE Q +Y+Y AA PVP HLV PIWKSV +SS G ++P+L MGL LC
Sbjct: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVA-SSSFGPHRFPSLAVMGLGNLC 127
Query: 173 LDFGKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR 217
D+ + EP+PGRCRRTDGKKWRC R+ + KYCERH+HRGR R
Sbjct: 128 FDYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGR 172
>Os02g0701300 Similar to Transcription activator GRF2 (Fragment)
Length = 394
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 79/127 (62%), Gaps = 14/127 (11%)
Query: 115 FTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKY--PTLMGLATLC 172
FTA Q +ELEQQ+ +Y+Y+ A VPVP LV PI + G S A+ Y P L G
Sbjct: 65 FTAAQYEELEQQALIYKYLVAGVPVPPDLVLPIRR---GLDSLAARFYNHPAL-GYGPY- 119
Query: 173 LDFGKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR---PV--QLVVEDDE 227
FGK +PEPGRCRRTDGKKWRC + A + KYCERHMHRGR R PV QLV +
Sbjct: 120 --FGKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVETQLVAQSQP 177
Query: 228 PDSTSGS 234
P S GS
Sbjct: 178 PSSVVGS 184
>Os03g0729500 Growth-regulating factor 6
Length = 456
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 115 FTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTLMGLATLCLD 174
FT Q ELE Q+ +Y+Y+AA PVP L+ PI +S+T S TL G + L
Sbjct: 12 FTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRRSLTSPYSPAYFGSSTL-GWGSFQLG 70
Query: 175 FGKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR 217
+ + +PEPGRCRRTDGKKWRC R+A+A++KYCERHM+RGR R
Sbjct: 71 YSGSADPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHR 113
>Os02g0776900 Growth-regulating factor 1
Length = 397
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 75/120 (62%), Gaps = 13/120 (10%)
Query: 115 FTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTL-------MG 167
FTA Q QELE Q+ +Y+YMA+ P+P+ L+ P+ +S S+ P+L +G
Sbjct: 19 FTASQWQELEHQALIYKYMASGTPIPSDLILPLRRSFLLDSALATS--PSLAFPPQPSLG 76
Query: 168 LATLCLDFGKNPE-PEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR---PVQLVV 223
+ FG+ E PEPGRCRRTDGKKWRC + A + KYCE+HMHRG+ R PV++ +
Sbjct: 77 WGCFGMGFGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVEMSL 136
>Os06g0116200 Similar to Transcription activator GRF3 (Fragment)
Length = 348
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 15/121 (12%)
Query: 108 PVGAGAAFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEG--------- 158
P A FTA Q ELEQQ+ +Y+Y+ A VPVP L+ PI + A++
Sbjct: 18 PQRGAAVFTAAQWAELEQQALIYKYLVAGVPVPGDLLLPIRPHSSAAATYSFANPAAAPF 77
Query: 159 --AQKYPTLMGLATLCLDFGKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRK 216
+P+L A +GK +PEP RCRRTDGKKWRC + A + KYCERHMHRGR
Sbjct: 78 YHHHHHPSLSYYAY----YGKKLDPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRN 133
Query: 217 R 217
R
Sbjct: 134 R 134
>Os06g0204800
Length = 317
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 115 FTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTL----MGLAT 170
FTA Q QELE Q+ +Y+YMAA PVP L+ + A++ P+L L
Sbjct: 11 FTATQWQELEHQALIYKYMAAGAPVPPDLLLHLRHRAAAAAAADVDTVPSLAFPPHHLGW 70
Query: 171 LCL-----DFGKNPE-PEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR---PVQL 221
C +G+ E PEPGRCRRTDGKKWRC R A KYCE+HMHRG+ R PV++
Sbjct: 71 GCYGAAAAQYGRRVEDPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGKNRSRKPVEM 130
>Os11g0551900 Similar to Growth-regulating factor 8
Length = 409
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 15/103 (14%)
Query: 115 FTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTLMGLATLCLD 174
FT Q ELE Q+ +Y+++AA V VP+ L+ PI +S+ G +P C D
Sbjct: 108 FTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRRSL---HPWGWGSFPPG------CAD 158
Query: 175 FGKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR 217
EP RCRRTDGKKWRC R+A+ ++KYCERH++RGR R
Sbjct: 159 V------EPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHR 195
>Os03g0674700 Similar to Growth-regulating factor 3
Length = 426
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 7/103 (6%)
Query: 115 FTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTLMGLATLCLD 174
FT Q ELE Q+ +Y+Y+ A+ P+P+ L+ I KS +++ + + P G D
Sbjct: 93 FTPSQWMELEHQALIYKYLNAKAPIPSSLLISISKSFRSSANRMSWR-PLYQGFPNADSD 151
Query: 175 FGKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR 217
PEPGRCRRTDGKKWRC + A+A+ KYCERH++R R R
Sbjct: 152 ------PEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHR 188
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.128 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,222,937
Number of extensions: 244237
Number of successful extensions: 434
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 9
Length of query: 269
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 170
Effective length of database: 11,866,615
Effective search space: 2017324550
Effective search space used: 2017324550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)