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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0674700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Growth-regulating factor 3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.29 (0.0348) R2 : 0.296
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.595 (0.0874) R2dC : 0.0761 R2C : 0.126
β3 : 0.868 (0.091) R2dE : 0.151 R2E : 0.207
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.166 (0.0735) R2dN8 : 0.0107 R2N8 : 0.0166
σ : 0.651
deviance : 195.6
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_____
C
peak time of C : 9.8
E
wheather : wind
threshold : 4
memory length : 12
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.97
open length of G : 3.85

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.88 0.649 3.29 -0.172 0.595 0.855 -0.0756 1.27 0.171 9.9 4.287 14 3.93 3.29
193.82 0.648 3.28 -0.223 0.603 0.854 0.132 -- 0.153 9.68 4.054 12 3.97 3.34
190.83 0.643 3.29 -0.178 0.595 0.855 -- 1.26 0.173 9.93 4.1 14 3.93 3.49
193.7 0.648 3.29 -0.265 0.585 0.887 -- -- 0.147 9.84 4.1 12 3.95 3.19
210.92 0.676 3.31 -0.204 -- 1 -- 1.15 0.153 -- 4.087 13 3.94 3.46
219.18 0.694 3.27 -0.229 0.974 -- 0.576 -- 0.224 7.69 -- -- -- --
220.09 0.695 3.27 -0.214 0.972 -- -- -- 0.224 7.78 -- -- -- --
213.25 0.68 3.32 -0.278 -- 1.03 -- -- 0.134 -- 4.1 12 3.97 3.39
195.6 0.651 3.29 -- 0.595 0.868 -- -- 0.166 9.8 4 12 3.97 3.85
271.21 0.77 3.29 -0.202 -- -- -- -- 0.237 -- -- -- -- --
221.3 0.696 3.26 -- 0.971 -- -- -- 0.247 7.79 -- -- -- --
215.41 0.684 3.31 -- -- 1.02 -- -- 0.155 -- 4.015 11 3.97 3.4
272.29 0.77 3.29 -- -- -- -- -- 0.26 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.04 wind 5.0 10 < th dose independent rect. 4 3
2 193.05 atmosphere 1005.0 10 > th dose independent rect. 4 3
3 193.06 wind 9.0 10 < th dose dependent rect. 4 3
5 193.20 temperature 10.0 10 > th dose dependent rect. 4 3
6 193.35 precipitation 0.1 10 < th dose independent rect. 4 3
7 193.35 precipitation 0.1 10 < th dose dependent rect. 4 3
9 193.47 temperature 15.0 10 > th dose independent rect. 7 21
12 193.55 temperature 10.0 10 > th dose independent rect. 4 3
14 193.55 temperature 30.0 10 < th dose independent rect. 4 3
15 193.55 humidity 50.0 10 > th dose independent rect. 4 3
18 193.55 atmosphere 995.0 10 > th dose independent rect. 4 3
19 193.55 atmosphere 1015.0 10 < th dose independent rect. 4 3
20 193.55 radiation 20.0 10 < th dose independent rect. 4 3
34 194.15 wind 9.0 10 < th dose independent rect. 7 21
35 194.32 atmosphere 995.0 10 > th dose dependent rect. 4 3
55 194.76 wind 1.0 90 < th dose independent rect. 1 4
57 194.99 atmosphere 1015.0 10 < th dose independent rect. 7 21
61 195.27 radiation 40.0 10 < th dose dependent rect. 4 3
64 195.63 precipitation 0.1 10 < th dose independent rect. 7 21
65 195.63 precipitation 0.1 10 < th dose dependent rect. 7 21
67 195.67 humidity 50.0 10 > th dose dependent rect. 4 3
75 195.95 atmosphere 995.0 10 > th dose independent rect. 7 21
91 196.55 wind 1.0 90 < th dose dependent rect. 4 1
115 197.20 temperature 10.0 10 > th dose dependent rect. 7 21
123 197.47 radiation 40.0 1440 < th dose independent rect. 4 4
124 197.49 temperature 25.0 90 < th dose independent rect. 4 1
130 197.80 wind 9.0 1440 < th dose independent rect. 4 4
131 197.80 temperature 10.0 1440 > th dose independent rect. 4 4
134 197.80 temperature 30.0 1440 < th dose independent rect. 4 4
138 197.80 humidity 50.0 1440 > th dose independent rect. 4 4
143 197.80 atmosphere 995.0 1440 > th dose independent rect. 4 4
144 197.80 atmosphere 1015.0 1440 < th dose independent rect. 4 4
145 197.80 temperature 10.0 1440 > th dose independent rect. 8 20
157 198.14 atmosphere 1015.0 10 < th dose dependent rect. 4 3
172 198.63 temperature 25.0 270 < th dose independent rect. 2 1
179 198.74 wind 1.0 90 < th dose dependent rect. 1 4
181 198.75 radiation 30.0 10 < th dose dependent rect. 4 5
190 198.93 atmosphere 1005.0 10 > th dose independent rect. 4 5
203 199.09 wind 9.0 30 < th dose dependent rect. 15 16
207 199.12 wind 9.0 30 < th dose dependent rect. 19 12
216 199.21 radiation 10.0 90 < th dose independent rect. 3 8
227 199.41 temperature 15.0 270 > th dose independent rect. 5 21
230 199.41 wind 9.0 90 < th dose dependent rect. 17 14
234 199.45 precipitation 0.1 270 < th dose independent rect. 3 1
236 199.45 precipitation 0.1 270 < th dose dependent rect. 3 1
239 199.48 wind 1.0 90 > th dose independent rect. 7 20
242 199.51 wind 1.0 270 > th dose independent rect. 2 2
306 199.75 wind 9.0 270 < th dose independent rect. 5 21
314 199.83 wind 9.0 90 < th dose dependent rect. 3 13
317 199.91 temperature 30.0 10 < th dose dependent rect. 4 3
342 200.01 radiation 20.0 90 < th dose dependent rect. 3 10
343 200.02 wind 1.0 270 > th dose independent rect. 5 21
344 200.03 atmosphere 1015.0 90 < th dose dependent rect. 4 1
373 200.12 precipitation 0.1 270 < th dose independent rect. 5 21
375 200.12 precipitation 0.1 270 < th dose dependent rect. 5 21
436 200.38 humidity 80.0 10 > th dose independent rect. 4 9
451 200.49 radiation 1.0 90 < th dose independent rect. 4 1
459 200.52 radiation 10.0 90 < th dose dependent rect. 4 1
466 200.56 humidity 90.0 90 > th dose dependent rect. 4 1
493 200.60 temperature 10.0 90 > th dose independent rect. 4 1
496 200.60 humidity 50.0 90 > th dose independent rect. 4 1
499 200.60 atmosphere 995.0 90 > th dose independent rect. 4 1
500 200.60 atmosphere 1010.0 90 < th dose independent rect. 4 1
506 200.60 temperature 10.0 90 > th dose independent rect. 5 23
515 200.68 precipitation 0.1 720 < th dose independent rect. 19 10
518 200.68 precipitation 0.1 720 < th dose dependent rect. 19 10
552 200.79 wind 9.0 90 < th dose independent rect. 5 23
554 200.82 humidity 90.0 90 > th dose independent rect. 4 1
557 200.85 humidity 50.0 90 > th dose dependent rect. 4 1
580 200.95 humidity 50.0 10 > th dose independent rect. 7 21
587 200.99 radiation 40.0 90 < th dose independent rect. 11 20
664 201.25 precipitation 0.1 720 < th dose independent rect. 17 14
665 201.25 precipitation 0.1 720 < th dose dependent rect. 17 14
716 201.47 precipitation 0.1 720 < th dose independent rect. 19 1
719 201.47 precipitation 0.1 720 < th dose dependent rect. 19 1
730 201.52 wind 5.0 30 < th dose independent rect. 15 16
735 201.57 wind 7.0 720 < th dose independent rect. 19 1
740 201.60 temperature 30.0 90 < th dose dependent rect. 4 1
748 201.63 wind 5.0 14400 > th dose dependent rect. 8 7
749 201.63 radiation 40.0 270 < th dose dependent rect. 15 14
759 201.69 wind 3.0 14400 > th dose dependent rect. 12 1
763 201.71 atmosphere 1015.0 10 < th dose dependent rect. 7 21
764 201.72 wind 7.0 720 < th dose independent rect. 19 10
794 201.77 wind 7.0 270 < th dose independent rect. 1 12
796 201.79 wind 5.0 14400 > th dose dependent rect. 9 5
803 201.84 wind 5.0 14400 > th dose dependent rect. 11 3
844 201.96 atmosphere 1000.0 10 > th dose independent rect. 4 12
848 201.97 precipitation 0.1 270 < th dose independent rect. 1 12
849 201.97 precipitation 0.1 270 < th dose dependent rect. 1 12
850 201.97 wind 9.0 270 < th dose dependent rect. 1 14
861 202.00 radiation 1.0 10 > th dose independent rect. 5 2
897 202.04 wind 9.0 720 < th dose independent rect. 17 14
906 202.07 radiation 40.0 90 < th dose dependent rect. 10 21
925 202.15 radiation 30.0 720 < th dose independent rect. 7 1
929 202.19 wind 5.0 30 < th dose independent rect. 19 12
933 202.20 wind 7.0 14400 < th dose independent rect. 7 8
939 202.22 wind 5.0 14400 < th dose independent rect. 12 1
951 202.25 wind 5.0 14400 > th dose independent rect. 12 1
958 202.27 wind 1.0 270 > th dose independent rect. 7 1
993 202.30 wind 5.0 14400 > th dose dependent rect. 24 15
995 202.31 wind 7.0 10 < th dose independent rect. 4 12