Os07g0467500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0467500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.91 | 0.21 | 11.9 | -0.77 | 0.676 | -0.407 | -0.116 | 2 | -0.379 | 5.18 | 24.96 | 4502 | -- | -- |
| 21.18 | 0.214 | 11.8 | -0.399 | 0.703 | -0.437 | -0.0783 | -- | -0.324 | 5.23 | 21.14 | 5077 | -- | -- |
| 19.94 | 0.208 | 11.9 | -0.771 | 0.675 | -0.408 | -- | 2.01 | -0.379 | 5.18 | 24.96 | 4502 | -- | -- |
| 21.18 | 0.214 | 11.8 | -0.381 | 0.689 | -0.42 | -- | -- | -0.307 | 5.18 | 21.2 | 5094 | -- | -- |
| 43.26 | 0.306 | 11.9 | -0.755 | -- | -0.465 | -- | 1.9 | -0.381 | -- | 24.9 | 4257 | -- | -- |
| 24.86 | 0.234 | 11.8 | -0.117 | 0.686 | -- | -0.143 | -- | -0.173 | 5.1 | -- | -- | -- | -- |
| 24.92 | 0.234 | 11.8 | -0.117 | 0.685 | -- | -- | -- | -0.172 | 5.1 | -- | -- | -- | -- |
| 44.69 | 0.311 | 11.8 | -0.411 | -- | -0.552 | -- | -- | -0.28 | -- | 19.19 | 4052 | -- | -- |
| 23.79 | 0.227 | 11.8 | -- | 0.684 | -0.212 | -- | -- | -0.188 | 5.18 | 25.6 | 4470 | -- | -- |
| 49.53 | 0.329 | 11.8 | -0.0922 | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
| 25.28 | 0.235 | 11.8 | -- | 0.683 | -- | -- | -- | -0.159 | 5.1 | -- | -- | -- | -- |
| 43.81 | 0.309 | 11.8 | -- | -- | 0.243 | -- | -- | -0.0497 | -- | 25.6 | 4470 | -- | -- |
| 49.75 | 0.329 | 11.8 | -- | -- | -- | -- | -- | -0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 3 | 19.28 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 12 | 19.51 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 16 | 19.56 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 17 | 19.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 17 |
| 21 | 19.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 24 | 19.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 16 |
| 30 | 19.62 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 14 |
| 33 | 19.63 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 40 | 19.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 45 | 19.67 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 62 | 19.68 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 72 | 19.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 81 | 19.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 82 | 19.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 89 | 19.71 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 100 | 19.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 107 | 19.73 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 134 | 19.76 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 145 | 19.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 151 | 19.78 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 211 | 19.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 20 |
| 230 | 19.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 261 | 19.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 6 |
| 307 | 19.88 | wind | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 315 | 19.88 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 317 | 19.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 7 |
| 335 | 19.89 | temperature | 25 | 4320 | > th | dose independent | sin | 4 | NA |
| 336 | 19.89 | temperature | 25 | 4320 | < th | dose independent | sin | 4 | NA |
| 345 | 19.89 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 19 |
| 349 | 19.89 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 365 | 19.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 14 | 15 |
| 381 | 19.91 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 382 | 19.91 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 383 | 19.91 | radiation | 1 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 388 | 19.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 19 |
| 397 | 19.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 410 | 19.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 413 | 19.92 | radiation | 1 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 426 | 19.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 487 | 19.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 489 | 19.95 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 536 | 19.96 | humidity | 70 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 550 | 19.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 674 | 20.01 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 691 | 20.02 | humidity | 90 | 14400 | > th | dose independent | sin | 14 | NA |
| 716 | 20.03 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 735 | 20.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 747 | 20.04 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 749 | 20.04 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 763 | 20.04 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 822 | 20.06 | wind | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 839 | 20.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 23 |
| 842 | 20.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 844 | 20.06 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 872 | 20.07 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 876 | 20.07 | temperature | 15 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 899 | 20.08 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 919 | 20.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 936 | 20.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 958 | 20.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 960 | 20.09 | temperature | 15 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 970 | 20.09 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 13 |
| 989 | 20.10 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 994 | 20.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |