BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0467500 Os07g0467500|AK066400
(269 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G37740.1 | chr4:17725533-17727609 REVERSE LENGTH=536 113 1e-25
AT3G13960.1 | chr3:4608526-4610160 FORWARD LENGTH=398 112 3e-25
AT2G22840.1 | chr2:9728841-9731141 FORWARD LENGTH=531 100 7e-22
AT2G36400.1 | chr2:15270300-15272617 REVERSE LENGTH=399 100 8e-22
AT2G06200.1 | chr2:2426340-2427255 FORWARD LENGTH=245 98 6e-21
AT3G52910.1 | chr3:19616177-19618268 REVERSE LENGTH=381 96 2e-20
AT5G53660.1 | chr5:21794636-21795929 FORWARD LENGTH=366 95 3e-20
AT2G45480.1 | chr2:18745583-18747403 FORWARD LENGTH=430 95 4e-20
AT4G24150.1 | chr4:12535972-12539387 FORWARD LENGTH=494 91 7e-19
>AT4G37740.1 | chr4:17725533-17727609 REVERSE LENGTH=536
Length = 535
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 74/117 (63%), Gaps = 8/117 (6%)
Query: 109 VGAGAAFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTLMGL 168
G FT Q ELEQQ+ +Y+Y+ A VPVP+ L+ I KS S P+ G
Sbjct: 159 TGVKGPFTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFYPYGSLP----PSSFGW 214
Query: 169 ATLCLDF-GKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR---PVQL 221
T L F G N +PEPGRCRRTDGKKWRC R+A+ ++KYCERH++RGR R PV++
Sbjct: 215 GTFHLGFAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEV 271
>AT3G13960.1 | chr3:4608526-4610160 FORWARD LENGTH=398
Length = 397
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Query: 115 FTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTLMGLATLCLD 174
FT Q +ELE Q+ +Y+YM + VPVP L+F I +S+ + + +L G +
Sbjct: 17 FTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRSLDTSLVSRLLPHQSL-GWGCYQMG 75
Query: 175 FGKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR 217
FG+ P+PEPGRCRRTDGKKWRC R A + KYCE+HMHRGR R
Sbjct: 76 FGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNR 118
>AT2G22840.1 | chr2:9728841-9731141 FORWARD LENGTH=531
Length = 530
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 66/117 (56%), Gaps = 19/117 (16%)
Query: 109 VGAGAAFTAMQLQELEQQSRVYQYMAARVPVPTHL-------VFPIWKSVTGASSEGAQK 161
G F+ Q ELEQQ+ +Y+Y+ A VPVP+ L FP
Sbjct: 128 TGVKGPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKSFFPY-----------GSL 176
Query: 162 YPTLMGLATLCLDF-GKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR 217
P G + L F G N +PEPGRCRRTDGKKWRC R+A+ ++KYCERH++RGR R
Sbjct: 177 PPNSFGWGSFHLGFSGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHR 233
>AT2G36400.1 | chr2:15270300-15272617 REVERSE LENGTH=399
Length = 398
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 65/116 (56%), Gaps = 18/116 (15%)
Query: 112 GAAFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPT------- 164
G+ F+ Q QELE Q+ +Y+YM A VP L+ PI KS+ S +P
Sbjct: 74 GSFFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLSPSYFLHHPLQHLPHYQ 133
Query: 165 ---LMGLATLCLDFGKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR 217
+G A + +PEPGRCRRTDGKKWRC R+ A KYCERHMHRGR R
Sbjct: 134 PAWYLGRAAM--------DPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNR 181
>AT2G06200.1 | chr2:2426340-2427255 FORWARD LENGTH=245
Length = 244
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 69/111 (62%), Gaps = 8/111 (7%)
Query: 115 FTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSV-----TGASSEGAQKYPTL---M 166
FT Q +ELE Q+ V++Y+AA +PVP HL+F I + + +SS + PTL
Sbjct: 7 FTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTLSPHF 66
Query: 167 GLATLCLDFGKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR 217
G + G+ + EPGRCRRTDGKKWRC + A + KYCERHMHRG+ R
Sbjct: 67 GWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNR 117
>AT3G52910.1 | chr3:19616177-19618268 REVERSE LENGTH=381
Length = 380
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 112 GAAFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTLMGLATL 171
G F+ Q QELE Q+ +Y+YM A VP L+ PI KS+ S +P
Sbjct: 80 GNFFSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHH 139
Query: 172 --CLDFGKNP-EPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR 217
+G+ +PEPGRC+RTDGKKWRC R+ +A KYC+RH+HRGR R
Sbjct: 140 QPSWYWGRGAMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNR 188
>AT5G53660.1 | chr5:21794636-21795929 FORWARD LENGTH=366
Length = 365
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 18/103 (17%)
Query: 115 FTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTLMGLATLCLD 174
FT QL+ELE+Q+ +Y+YM A +PVP L+ V+ SS A+ C +
Sbjct: 60 FTNAQLKELERQAMIYKYMIASIPVPFDLL------VSSPSS------------ASPCNN 101
Query: 175 FGKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR 217
+ EPGRCRRTDGKKWRC + ++N KYCE+H+HRGR R
Sbjct: 102 KNIAGDLEPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPR 144
>AT2G45480.1 | chr2:18745583-18747403 FORWARD LENGTH=430
Length = 429
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 117 AMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTLMGLATLCLDFG 176
A QL E Q+ VY+Y+ A + VP HLV PIW S+ +SS + + + L+ +
Sbjct: 25 AAQLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSL-LSNKGVTHI 83
Query: 177 KNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKRPVQL 221
E EP RCRRTDGKKWRC + EKYCERHMHRGRKR +L
Sbjct: 84 DTLETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRKL 128
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 148 WKS--VTGASSEGAQKYPTLMGLATLCLDF-GKNPEPEPGRCRRTDGKKWRCWRNAIANE 204
WK+ V G G P + C G + EPGRCRRTDGKKWRC ++ ++ +
Sbjct: 270 WKNMNVNGGLFHGIHFSPDTVLQERGCFRLQGVETDNEPGRCRRTDGKKWRCSKDVLSGQ 329
Query: 205 KYCERHMHRGRKR 217
KYC++HMHRG K+
Sbjct: 330 KYCDKHMHRGMKK 342
>AT4G24150.1 | chr4:12535972-12539387 FORWARD LENGTH=494
Length = 493
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 68/137 (49%), Gaps = 32/137 (23%)
Query: 111 AGAAFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTLMGLAT 170
AGAAF+ Q ELE+Q +Y+YM A VPVP L+ P K+ ++ Y + G+ +
Sbjct: 146 AGAAFSEAQWHELERQRNIYKYMMASVPVPPELLTPFPKNHQSNTNPDVDTYRS--GMFS 203
Query: 171 LCLDFGKNP------------------------------EPEPGRCRRTDGKKWRCWRNA 200
+ D+ P + EP RC+RTDGKKWRC RN
Sbjct: 204 IYADYKNLPLSMWMTVTVAVATGGSLQLGIASSASNNTADLEPWRCKRTDGKKWRCSRNV 263
Query: 201 IANEKYCERHMHRGRKR 217
I ++KYCERH H+ R R
Sbjct: 264 IPDQKYCERHTHKSRPR 280
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.128 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,691,704
Number of extensions: 137976
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 10
Length of query: 269
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 172
Effective length of database: 8,447,217
Effective search space: 1452921324
Effective search space used: 1452921324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)