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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0678800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription activator.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0148) R2 : 0.0081
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.06 (0.0311) R2dN8 : 0.0105 R2N8 : 0.0081
σ : 0.278
deviance : 35.49
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.88 0.269 3.11 0.00857 0.0544 -0.274 0.0332 1.17 -0.0638 9 1.06 16 -- --
34.02 0.272 3.1 0.0559 0.0611 -0.194 0.068 -- -0.0507 9.07 1.039 14 -- --
32.88 0.267 3.11 0.00974 0.0547 -0.273 -- 1.17 -0.0638 8.81 1.064 16 -- --
34.03 0.272 3.1 0.0589 0.0641 -0.186 -- -- -0.0509 8.27 1.064 14 -- --
33.05 0.268 3.12 0.00767 -- -0.284 -- 1.19 -0.0637 -- 1.079 16 -- --
34.77 0.276 3.1 0.0802 0.101 -- -0.091 -- -0.0534 6.22 -- -- -- --
34.79 0.276 3.1 0.0794 0.101 -- -- -- -0.053 6.52 -- -- -- --
34.25 0.273 3.1 0.0573 -- -0.202 -- -- -0.0502 -- 1.079 14 -- --
34.12 0.272 3.1 -- 0.0634 -0.193 -- -- -0.0577 8.3 1.012 14 -- --
35.32 0.278 3.1 0.0819 -- -- -- -- -0.0509 -- -- -- -- --
34.95 0.277 3.1 -- 0.102 -- -- -- -0.0618 6.48 -- -- -- --
34.33 0.273 3.11 -- -- -0.209 -- -- -0.0564 -- 1.091 14 -- --
35.49 0.278 3.11 -- -- -- -- -- -0.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.50 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 29.74 wind 1.0 10 < th dose dependent rect. 2 1
3 29.79 wind 1.0 10 < th dose independent rect. 2 1
4 29.81 radiation 1.0 43200 < th dose dependent rect. 3 1
5 29.81 atmosphere 1005.0 10 > th dose dependent rect. 2 2
6 29.84 atmosphere 995.0 10 > th dose independent rect. 3 23
11 29.86 atmosphere 1010.0 30 < th dose dependent rect. 2 1
19 29.93 humidity 90.0 30 > th dose dependent rect. 2 1
22 29.94 humidity 90.0 10 > th dose independent rect. 2 1
25 29.96 temperature 10.0 10 > th dose dependent rect. 2 1
27 29.96 humidity 50.0 10 > th dose dependent rect. 2 1
31 29.97 temperature 10.0 10 > th dose independent rect. 2 1
34 29.97 temperature 25.0 10 < th dose independent rect. 2 1
36 29.97 humidity 50.0 10 > th dose independent rect. 2 1
39 29.97 atmosphere 995.0 10 > th dose independent rect. 2 1
40 29.97 atmosphere 1010.0 10 < th dose independent rect. 2 1
42 29.97 radiation 1.0 10 < th dose independent rect. 2 1
47 29.97 precipitation 0.1 10 < th dose independent rect. 2 1
48 29.97 temperature 10.0 10 > th dose independent rect. 3 23
51 29.97 radiation 1.0 10 < th dose dependent rect. 2 1
56 29.97 precipitation 0.1 10 < th dose dependent rect. 2 1
91 30.03 temperature 30.0 30 < th dose dependent rect. 2 1
105 30.05 atmosphere 995.0 10 > th dose dependent rect. 2 1
117 30.13 precipitation 0.1 30 < th dose independent rect. 3 23
118 30.13 precipitation 0.1 30 < th dose dependent rect. 3 23
119 30.14 wind 1.0 30 > th dose independent rect. 2 1
131 30.24 wind 9.0 1440 < th dose independent rect. 3 1
132 30.24 temperature 10.0 1440 > th dose independent rect. 3 1
135 30.24 temperature 30.0 1440 < th dose independent rect. 3 1
139 30.24 humidity 50.0 1440 > th dose independent rect. 3 1
148 30.24 atmosphere 995.0 1440 > th dose independent rect. 3 1
149 30.24 radiation 1.0 1440 < th dose independent rect. 3 1
169 30.24 temperature 10.0 1440 > th dose independent rect. 4 23
191 30.37 wind 9.0 30 < th dose independent rect. 3 23
199 30.67 humidity 50.0 30 > th dose independent rect. 3 23
206 30.78 wind 1.0 10 < th dose independent rect. 14 13
208 30.81 wind 1.0 10 < th dose independent rect. 17 10
210 30.82 wind 1.0 10 < th dose independent rect. 21 6
289 31.30 humidity 90.0 90 < th dose independent rect. 2 1
303 31.45 wind 1.0 10 < th dose independent rect. 6 21
397 31.94 wind 1.0 30 < th dose dependent rect. 9 18
453 32.22 humidity 90.0 90 < th dose independent rect. 1 3
455 32.24 wind 1.0 10 > th dose independent sin 16 NA
469 32.28 temperature 30.0 30 < th dose independent rect. 3 23
492 32.35 temperature 25.0 270 > th dose independent rect. 23 4
499 32.36 atmosphere 1015.0 30 < th dose independent rect. 3 23
536 32.46 humidity 80.0 14400 < th dose dependent rect. 5 4
598 32.52 temperature 25.0 10 < th dose independent rect. 24 3
602 32.53 precipitation 0.1 720 < th dose independent rect. 15 8
605 32.53 precipitation 0.1 720 < th dose dependent rect. 15 8
611 32.54 wind 1.0 30 > th dose independent rect. 3 23
645 32.59 temperature 10.0 720 > th dose independent rect. 15 8
646 32.59 temperature 10.0 720 > th dose independent rect. 23 16
652 32.60 atmosphere 995.0 720 > th dose independent rect. 23 16
668 32.64 humidity 70.0 14400 > th dose independent rect. 8 1
670 32.64 temperature 10.0 720 > th dose independent rect. 3 8
671 32.64 atmosphere 995.0 720 > th dose independent rect. 3 8
672 32.64 temperature 10.0 720 > th dose independent rect. 11 16
691 32.68 humidity 70.0 14400 > th dose independent rect. 4 5
692 32.68 humidity 70.0 14400 > th dose independent rect. 24 9
693 32.68 humidity 70.0 14400 > th dose independent rect. 22 11
698 32.69 humidity 70.0 14400 > th dose independent rect. 6 3
716 32.71 radiation 10.0 30 < th dose independent rect. 3 23
721 32.72 precipitation 0.1 720 < th dose independent rect. 11 16
730 32.72 precipitation 0.1 720 < th dose dependent rect. 11 16
748 32.73 wind 9.0 720 < th dose independent rect. 3 8
763 32.75 humidity 70.0 14400 < th dose independent rect. 8 1
787 32.76 wind 1.0 10 < th dose independent sin 17 NA
832 32.77 humidity 50.0 720 > th dose independent rect. 3 8
833 32.77 radiation 40.0 720 < th dose independent rect. 15 8
885 32.84 humidity 70.0 14400 < th dose independent rect. 6 3
902 32.84 atmosphere 995.0 30 > th dose dependent rect. 3 23
911 32.85 wind 9.0 30 < th dose dependent rect. 12 15
912 32.85 temperature 10.0 90 > th dose dependent rect. 3 22
932 32.88 radiation 40.0 90 < th dose independent rect. 12 15
936 32.88 radiation 20.0 30 < th dose dependent rect. 3 23
980 32.94 atmosphere 1015.0 720 < th dose independent rect. 3 8