BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0678800 Os02g0678800|AK108170
(211 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G36400.1 | chr2:15270300-15272617 REVERSE LENGTH=399 126 1e-29
AT3G52910.1 | chr3:19616177-19618268 REVERSE LENGTH=381 125 1e-29
AT4G37740.1 | chr4:17725533-17727609 REVERSE LENGTH=536 120 7e-28
AT2G22840.1 | chr2:9728841-9731141 FORWARD LENGTH=531 109 1e-24
AT3G13960.1 | chr3:4608526-4610160 FORWARD LENGTH=398 108 2e-24
AT2G45480.1 | chr2:18745583-18747403 FORWARD LENGTH=430 98 3e-21
AT5G53660.1 | chr5:21794636-21795929 FORWARD LENGTH=366 98 3e-21
AT2G06200.1 | chr2:2426340-2427255 FORWARD LENGTH=245 95 2e-20
AT4G24150.1 | chr4:12535972-12539387 FORWARD LENGTH=494 86 2e-17
>AT2G36400.1 | chr2:15270300-15272617 REVERSE LENGTH=399
Length = 398
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 78/113 (69%), Gaps = 5/113 (4%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAVMGLGNL-- 126
++ Q QELE Q LIYRY AGA VP L+LPI KS+ S P F + L +
Sbjct: 77 FSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLS--PSYFLHHPLQHLPHYQP 134
Query: 127 -CFDYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVE 178
+ R++M+P+PGRCRRTDGKKWRCSRDV GHKYCERH+HRGR RSRKPVE
Sbjct: 135 AWYLGRAAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVE 187
>AT3G52910.1 | chr3:19616177-19618268 REVERSE LENGTH=381
Length = 380
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/121 (54%), Positives = 77/121 (63%), Gaps = 20/121 (16%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSS-----------FGPHRFPS 117
++ Q QELE Q LIYRY AGA VP L+LPI KS+ S PH PS
Sbjct: 83 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHHQPS 142
Query: 118 LAVMGLGNLCFDYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPV 177
+ R +M+P+PGRC+RTDGKKWRCSRDVV GHKYC+RH+HRGR RSRKPV
Sbjct: 143 W---------YWGRGAMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPV 193
Query: 178 E 178
E
Sbjct: 194 E 194
>AT4G37740.1 | chr4:17725533-17727609 REVERSE LENGTH=536
Length = 535
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 70/111 (63%), Gaps = 6/111 (5%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAVMGLGNLCF 128
T Q ELE Q LIY+Y A PVP L++ I KS F P+ + G G
Sbjct: 165 FTLTQWAELEQQALIYKYITANVPVPSSLLISIKKS-----FYPYGSLPPSSFGWGTFHL 219
Query: 129 DYRS-SMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVE 178
+ +M+P+PGRCRRTDGKKWRCSRD VP KYCERH++RGR RSRKPVE
Sbjct: 220 GFAGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 270
>AT2G22840.1 | chr2:9728841-9731141 FORWARD LENGTH=531
Length = 530
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAVMGLGNLCF 128
+ Q ELE Q LIY+Y A PVP L SF P+ G G+
Sbjct: 134 FSLTQWAELEQQALIYKYITANVPVPSSL-----LLSLKKSFFPYGSLPPNSFGWGSFHL 188
Query: 129 DYRS-SMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVE 178
+ +M+P+PGRCRRTDGKKWRCSRD VP KYCERH++RGR RSRKPVE
Sbjct: 189 GFSGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 239
>AT3G13960.1 | chr3:4608526-4610160 FORWARD LENGTH=398
Length = 397
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAVMGLGNLCF 128
T Q +ELEHQ LIY+Y +G PVP L+ I +S+ +S R +G G
Sbjct: 17 FTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRSLDTSLVS--RLLPHQSLGWGCYQM 74
Query: 129 DYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVE 178
+ +P+PGRCRRTDGKKWRCSR+ P KYCE+H+HRGR R+RK ++
Sbjct: 75 GFGRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLD 124
>AT2G45480.1 | chr2:18745583-18747403 FORWARD LENGTH=430
Length = 429
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 67/103 (65%), Gaps = 2/103 (1%)
Query: 73 QQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAVMGLGNLCFDYRS 132
Q E Q L+YRY AG VP HLV+PIW S+A SS + + S ++ L N +
Sbjct: 27 QLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSL--LSNKGVTHID 84
Query: 133 SMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRK 175
++E +P RCRRTDGKKWRCS V+ KYCERH+HRGR RSRK
Sbjct: 85 TLETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRK 127
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Query: 102 WKSVASSS---FGPHRFPSLAVMGLGNLCFDYRS-SMEPDPGRCRRTDGKKWRCSRDVVP 157
WK++ + G H P + G CF + + +PGRCRRTDGKKWRCS+DV+
Sbjct: 270 WKNMNVNGGLFHGIHFSPDTVLQERG--CFRLQGVETDNEPGRCRRTDGKKWRCSKDVLS 327
Query: 158 GHKYCERHVHRGRGRSRKPVE 178
G KYC++H+HRG + + PV+
Sbjct: 328 GQKYCDKHMHRGM-KKKHPVD 347
>AT5G53660.1 | chr5:21794636-21795929 FORWARD LENGTH=366
Length = 365
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 67/110 (60%), Gaps = 19/110 (17%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAVMGLGNLCF 128
T Q +ELE Q +IY+Y A PVP L++ + SS P ++A G+L
Sbjct: 60 FTNAQLKELERQAMIYKYMIASIPVPFDLLVS-----SPSSASPCNNKNIA----GDL-- 108
Query: 129 DYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVE 178
+PGRCRRTDGKKWRC+++VV HKYCE+H+HRGR RSRK VE
Sbjct: 109 --------EPGRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVE 150
>AT2G06200.1 | chr2:2426340-2427255 FORWARD LENGTH=245
Length = 244
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 70/124 (56%), Gaps = 23/124 (18%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASS--------------SFGPHR 114
T Q +ELE+Q L+++Y AA PVP HL+ I + S + PH
Sbjct: 7 FTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTLSPHF 66
Query: 115 FPSLAVMGLGNLCFDYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGR-- 172
++ MG+G ++ +PGRCRRTDGKKWRCS++ P KYCERH+HRG+ R
Sbjct: 67 GWNVYEMGMGR-------KIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSS 119
Query: 173 SRKP 176
SRKP
Sbjct: 120 SRKP 123
>AT4G24150.1 | chr4:12535972-12539387 FORWARD LENGTH=494
Length = 493
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 69/133 (51%), Gaps = 27/133 (20%)
Query: 73 QQQELEHQVLIYRYFAAGAPVPVHLVLPI--------------WKSVASSSFGPHR-FP- 116
Q ELE Q IY+Y A PVP L+ P ++S S + ++ P
Sbjct: 154 QWHELERQRNIYKYMMASVPVPPELLTPFPKNHQSNTNPDVDTYRSGMFSIYADYKNLPL 213
Query: 117 ------SLAVMGLGNLCFDYRSSM-----EPDPGRCRRTDGKKWRCSRDVVPGHKYCERH 165
++AV G+L SS + +P RC+RTDGKKWRCSR+V+P KYCERH
Sbjct: 214 SMWMTVTVAVATGGSLQLGIASSASNNTADLEPWRCKRTDGKKWRCSRNVIPDQKYCERH 273
Query: 166 VHRGRGRSRKPVE 178
H+ R RSRK VE
Sbjct: 274 THKSRPRSRKHVE 286
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,133,100
Number of extensions: 147598
Number of successful extensions: 270
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 10
Length of query: 211
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 117
Effective length of database: 8,529,465
Effective search space: 997947405
Effective search space used: 997947405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)