BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0678800 Os02g0678800|AK108170
(211 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0678800 Similar to Transcription activator 339 1e-93
Os07g0467500 Conserved hypothetical protein 141 4e-34
Os03g0729500 Growth-regulating factor 6 125 2e-29
Os02g0701300 Similar to Transcription activator GRF2 (Fragm... 121 3e-28
Os02g0776900 Growth-regulating factor 1 119 2e-27
Os06g0116200 Similar to Transcription activator GRF3 (Fragm... 112 2e-25
Os06g0204800 105 3e-23
Os03g0674700 Similar to Growth-regulating factor 3 99 2e-21
Os11g0551900 Similar to Growth-regulating factor 8 99 2e-21
>Os02g0678800 Similar to Transcription activator
Length = 211
Score = 339 bits (869), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 170/211 (80%), Positives = 170/211 (80%)
Query: 1 MDEEKEADSPQPPSKLPRLSGADPNAGVVTMAAXXXXXXXXXXXXXXXDSRGERDVEXXX 60
MDEEKEADSPQPPSKLPRLSGADPNAGVVTMAA DSRGERDVE
Sbjct: 1 MDEEKEADSPQPPSKLPRLSGADPNAGVVTMAAPPPPVGLGLGLGLGGDSRGERDVEASA 60
Query: 61 XXXXXXXXLTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAV 120
LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAV
Sbjct: 61 AAAHKATALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAV 120
Query: 121 MGLGNLCFDYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEXX 180
MGLGNLCFDYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVE
Sbjct: 121 MGLGNLCFDYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEAS 180
Query: 181 XXXXXXXXXXXXXIVFSPTSVLLAHGTARAT 211
IVFSPTSVLLAHGTARAT
Sbjct: 181 AAATPANNGGGGGIVFSPTSVLLAHGTARAT 211
>Os07g0467500 Conserved hypothetical protein
Length = 269
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVA-SSSFGPHRFPSLAVMGLGNLC 127
T MQ QELE Q +Y+Y AA PVP HLV PIWKSV +SS G ++P+L MGL LC
Sbjct: 115 FTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKYPTL--MGLATLC 172
Query: 128 FDYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGR 172
D+ + EP+PGRCRRTDGKKWRC R+ + KYCERH+HRGR R
Sbjct: 173 LDFGKNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR 217
>Os03g0729500 Growth-regulating factor 6
Length = 456
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 77/110 (70%), Gaps = 2/110 (1%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAVMGLGNLCF 128
T Q ELEHQ LIY+Y AA +PVP L++PI +S+ +S + P F S + +G G+
Sbjct: 12 FTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRRSL-TSPYSPAYFGS-STLGWGSFQL 69
Query: 129 DYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVE 178
Y S +P+PGRCRRTDGKKWRCSRD V KYCERH++RGR RSRK VE
Sbjct: 70 GYSGSADPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVE 119
>Os02g0701300 Similar to Transcription activator GRF2 (Fragment)
Length = 394
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 73/110 (66%), Gaps = 6/110 (5%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAVMGLGNLCF 128
T Q +ELE Q LIY+Y AG PVP LVLPI + + S + RF + +G G
Sbjct: 65 FTAAQYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLA---ARFYNHPALGYGPY-- 119
Query: 129 DYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVE 178
+ ++P+PGRCRRTDGKKWRCS++ P KYCERH+HRGR RSRKPVE
Sbjct: 120 -FGKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168
>Os02g0776900 Growth-regulating factor 1
Length = 397
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 76/115 (66%), Gaps = 5/115 (4%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSV----ASSSFGPHRFPSLAVMGLG 124
T Q QELEHQ LIY+Y A+G P+P L+LP+ +S A ++ FP +G G
Sbjct: 19 FTASQWQELEHQALIYKYMASGTPIPSDLILPLRRSFLLDSALATSPSLAFPPQPSLGWG 78
Query: 125 NLCFDY-RSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVE 178
+ R + +P+PGRCRRTDGKKWRCS++ P KYCE+H+HRG+ RSRKPVE
Sbjct: 79 CFGMGFGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 133
>Os06g0116200 Similar to Transcription activator GRF3 (Fragment)
Length = 348
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 71/122 (58%), Gaps = 18/122 (14%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPI---WKSVASSSFGP---------HRFP 116
T Q ELE Q LIY+Y AG PVP L+LPI + A+ SF H P
Sbjct: 25 FTAAQWAELEQQALIYKYLVAGVPVPGDLLLPIRPHSSAAATYSFANPAAAPFYHHHHHP 84
Query: 117 SLAVMGLGNLCFDYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKP 176
SL+ Y ++P+P RCRRTDGKKWRCS++ P KYCERH+HRGR RSRKP
Sbjct: 85 SLSYYAY------YGKKLDPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKP 138
Query: 177 VE 178
VE
Sbjct: 139 VE 140
>Os06g0204800
Length = 317
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 73/122 (59%), Gaps = 15/122 (12%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIW-----------KSVASSSFGPHRFPS 117
T Q QELEHQ LIY+Y AAGAPVP L+L + +V S +F PH
Sbjct: 11 FTATQWQELEHQALIYKYMAAGAPVPPDLLLHLRHRAAAAAAADVDTVPSLAFPPHH--- 67
Query: 118 LAVMGLGNLCFDY-RSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKP 176
L G Y R +P+PGRCRRTDGKKWRCSR+ KYCE+H+HRG+ RSRKP
Sbjct: 68 LGWGCYGAAAAQYGRRVEDPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGKNRSRKP 127
Query: 177 VE 178
VE
Sbjct: 128 VE 129
>Os03g0674700 Similar to Growth-regulating factor 3
Length = 426
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 67/106 (63%), Gaps = 8/106 (7%)
Query: 73 QQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAVMGLGNLCFDYRS 132
Q ELEHQ LIY+Y A AP+P L++ I KS SS+ P G N D
Sbjct: 97 QWMELEHQALIYKYLNAKAPIPSSLLISISKSFRSSANRMSWRP--LYQGFPNADSD--- 151
Query: 133 SMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVE 178
P+PGRCRRTDGKKWRCS++ + HKYCERH++R R RSRKPVE
Sbjct: 152 ---PEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVE 194
>Os11g0551900 Similar to Growth-regulating factor 8
Length = 409
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 65/110 (59%), Gaps = 16/110 (14%)
Query: 69 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAVMGLGNLCF 128
T Q ELEHQ LIY++ AA VP L+LPI +S+ +G FP C
Sbjct: 108 FTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRRSLHPWGWGS--FPPG--------CA 157
Query: 129 DYRSSMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVE 178
D +P RCRRTDGKKWRCSRD V KYCERH++RGR RSRK VE
Sbjct: 158 DV------EPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVE 201
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,079,222
Number of extensions: 272720
Number of successful extensions: 614
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 9
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)