Os02g0701300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription activator GRF2 (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os02g0701300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription activator GRF2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.61 | 0.559 | 5.04 | -0.622 | 0.141 | 2 | -1.94 | 0.38 | -0.125 | 18.5 | 29.8 | 10 | -- | -- |
| 141.7 | 0.554 | 5.03 | -0.564 | 0.109 | 1.99 | -2.04 | -- | -0.117 | 18.1 | 29.87 | 8 | -- | -- |
| 144.07 | 0.559 | 5.08 | -0.718 | 0.439 | 1.66 | -- | 0.744 | -0.205 | 23.5 | 29.23 | 63 | -- | -- |
| 144.69 | 0.56 | 5.06 | -0.619 | 0.456 | 1.63 | -- | -- | -0.183 | 23.4 | 29.41 | 64 | -- | -- |
| 152.32 | 0.578 | 5.04 | -0.649 | -- | 1.97 | -- | 0.618 | -0.15 | -- | 29.71 | 29 | -- | -- |
| 179.24 | 0.628 | 5.12 | -0.993 | 0.913 | -- | 0.878 | -- | -0.51 | 1.58 | -- | -- | -- | -- |
| 181.88 | 0.632 | 5.13 | -1.02 | 0.912 | -- | -- | -- | -0.513 | 1.2 | -- | -- | -- | -- |
| 152.87 | 0.578 | 5.03 | -0.545 | -- | 1.97 | -- | -- | -0.122 | -- | 29.71 | 29 | -- | -- |
| 153.57 | 0.577 | 5.03 | -- | 0.391 | 1.97 | -- | -- | -0.0823 | 22.5 | 29.35 | 66 | -- | -- |
| 233.33 | 0.714 | 5.11 | -0.985 | -- | -- | -- | -- | -0.495 | -- | -- | -- | -- | -- |
| 209.3 | 0.677 | 5.1 | -- | 0.895 | -- | -- | -- | -0.4 | 1.15 | -- | -- | -- | -- |
| 160.07 | 0.589 | 5.01 | -- | -- | 2.14 | -- | -- | -0.0238 | -- | 29.51 | 23 | -- | -- |
| 258.91 | 0.751 | 5.09 | -- | -- | -- | -- | -- | -0.386 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 3 | 139.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 9 | 140.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 10 | 140.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 11 | 140.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 13 | 141.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 14 | 141.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 17 | 141.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 25 | 141.73 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 27 | 141.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 39 | 142.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 43 | 142.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 44 | 142.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 50 | 142.38 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 83 | 143.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 93 | 143.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 96 | 143.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 120 | 144.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 121 | 144.15 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 130 | 144.25 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 137 | 144.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 167 | 144.89 | temperature | 20 | 720 | > th | dose independent | sin | 23 | NA |
| 177 | 145.09 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 188 | 145.16 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 15 |
| 199 | 145.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 226 | 145.52 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 236 | 145.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 240 | 145.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 254 | 145.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 256 | 145.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 268 | 145.80 | temperature | 30 | 10 | < th | dose dependent | sin | 17 | NA |
| 280 | 145.91 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 285 | 145.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 300 | 146.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 341 | 146.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 427 | 146.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 435 | 146.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 438 | 146.75 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 506 | 146.99 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 508 | 147.01 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 15 |
| 519 | 147.04 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 20 |
| 527 | 147.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 561 | 147.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 13 |
| 598 | 147.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 661 | 147.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 770 | 147.76 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 803 | 147.81 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 14 |
| 815 | 147.84 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 11 |
| 893 | 147.98 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 894 | 147.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 992 | 148.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 14 |