BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0701300 Os02g0701300|AK063983
(394 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13960.1 | chr3:4608526-4610160 FORWARD LENGTH=398 160 1e-39
AT2G36400.1 | chr2:15270300-15272617 REVERSE LENGTH=399 136 2e-32
AT4G37740.1 | chr4:17725533-17727609 REVERSE LENGTH=536 131 7e-31
AT3G52910.1 | chr3:19616177-19618268 REVERSE LENGTH=381 127 1e-29
AT2G06200.1 | chr2:2426340-2427255 FORWARD LENGTH=245 122 4e-28
AT2G22840.1 | chr2:9728841-9731141 FORWARD LENGTH=531 121 6e-28
AT5G53660.1 | chr5:21794636-21795929 FORWARD LENGTH=366 105 3e-23
AT4G24150.1 | chr4:12535972-12539387 FORWARD LENGTH=494 101 6e-22
AT2G45480.1 | chr2:18745583-18747403 FORWARD LENGTH=430 90 2e-18
>AT3G13960.1 | chr3:4608526-4610160 FORWARD LENGTH=398
Length = 397
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/104 (70%), Positives = 87/104 (83%), Gaps = 4/104 (3%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLD-SLAARFYNHPALGYGPY---FGKKL 124
Q+EELE QALIYKY+V+GVPVPP+L+ IRR LD SL +R H +LG+G Y FG+K
Sbjct: 21 QWEELEHQALIYKYMVSGVPVPPELIFSIRRSLDTSLVSRLLPHQSLGWGCYQMGFGRKP 80
Query: 125 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168
DPEPGRCRRTDGKKWRCS+EA PDSKYCE+HMHRGRNR+RK ++
Sbjct: 81 DPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLD 124
>AT2G36400.1 | chr2:15270300-15272617 REVERSE LENGTH=399
Length = 398
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 80/108 (74%), Gaps = 7/108 (6%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLAARFYNHPALGYGP------YFGK 122
Q++ELE QALIY+Y++AG VP +L+LPI++ L L+ ++ H L + P Y G+
Sbjct: 81 QWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLSPSYFLHHPLQHLPHYQPAWYLGR 140
Query: 123 K-LDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVET 169
+DPEPGRCRRTDGKKWRCS++ KYCERHMHRGRNRSRKPVET
Sbjct: 141 AAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVET 188
>AT4G37740.1 | chr4:17725533-17727609 REVERSE LENGTH=536
Length = 535
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%), Gaps = 16/110 (14%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLAARFYNHPAL-----GYGPYF--- 120
Q+ ELEQQALIYKY+ A VPVP L++ I++ FY + +L G+G +
Sbjct: 169 QWAELEQQALIYKYITANVPVPSSLLISIKKS-------FYPYGSLPPSSFGWGTFHLGF 221
Query: 121 -GKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVET 169
G +DPEPGRCRRTDGKKWRCS++A PD KYCERH++RGR+RSRKPVE
Sbjct: 222 AGGNMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEV 271
>AT3G52910.1 | chr3:19616177-19618268 REVERSE LENGTH=381
Length = 380
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 8/108 (7%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLA-ARFYNHPALGYGP------YFG 121
Q++ELE QALIY+Y++AG VP +L+LPI++ L + F +HP P Y+G
Sbjct: 87 QWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHHQPSWYWG 146
Query: 122 K-KLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168
+ +DPEPGRC+RTDGKKWRCS++ KYC+RH+HRGRNRSRKPVE
Sbjct: 147 RGAMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVE 194
>AT2G06200.1 | chr2:2426340-2427255 FORWARD LENGTH=245
Length = 244
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 77/116 (66%), Gaps = 15/116 (12%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLAARFYNH----------PALGYGP 118
Q+EELE QAL++KYL A +PVPP L+ I+R ++ + P G+
Sbjct: 11 QWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTLSPHFGWNV 70
Query: 119 Y---FGKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNR--SRKPVET 169
Y G+K+D EPGRCRRTDGKKWRCSKEA PDSKYCERHMHRG+NR SRKP T
Sbjct: 71 YEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRKPPPT 126
>AT2G22840.1 | chr2:9728841-9731141 FORWARD LENGTH=531
Length = 530
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 76/104 (73%), Gaps = 6/104 (5%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLAARFYNHPALGYGPYF----GKKL 124
Q+ ELEQQALIYKY+ A VPVP L+L +++ + N + G+G + G +
Sbjct: 138 QWAELEQQALIYKYITANVPVPSSLLLSLKKSFFPYGSLPPN--SFGWGSFHLGFSGGNM 195
Query: 125 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168
DPEPGRCRRTDGKKWRCS++A PD KYCERH++RGR+RSRKPVE
Sbjct: 196 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 239
>AT5G53660.1 | chr5:21794636-21795929 FORWARD LENGTH=366
Length = 365
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 66/100 (66%), Gaps = 13/100 (13%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLAARFYNHPALGYGPYFGKKLDPEP 128
Q +ELE+QA+IYKY++A +PVP DL++ S A+ N G D EP
Sbjct: 64 QLKELERQAMIYKYMIASIPVPFDLLV----SSPSSASPCNNKNIAG---------DLEP 110
Query: 129 GRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168
GRCRRTDGKKWRC+KE + KYCE+H+HRGR RSRK VE
Sbjct: 111 GRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVE 150
>AT4G24150.1 | chr4:12535972-12539387 FORWARD LENGTH=494
Length = 493
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 70/134 (52%), Gaps = 33/134 (24%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPI---------------RRGLDSLAARFYNHP- 112
Q+ ELE+Q IYKY++A VPVPP+L+ P R G+ S+ A + N P
Sbjct: 154 QWHELERQRNIYKYMMASVPVPPELLTPFPKNHQSNTNPDVDTYRSGMFSIYADYKNLPL 213
Query: 113 ----------ALGYGPYFG-------KKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERH 155
A G G D EP RC+RTDGKKWRCS+ PD KYCERH
Sbjct: 214 SMWMTVTVAVATGGSLQLGIASSASNNTADLEPWRCKRTDGKKWRCSRNVIPDQKYCERH 273
Query: 156 MHRGRNRSRKPVET 169
H+ R RSRK VE+
Sbjct: 274 THKSRPRSRKHVES 287
>AT2G45480.1 | chr2:18745583-18747403 FORWARD LENGTH=430
Length = 429
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLAARFYNHPAL----GYGPYFGKKL 124
Q E QAL+Y+Y+ AG+ VP LV+PI L ++ YN+ + G L
Sbjct: 27 QLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSLLSNKGVTHIDTL 86
Query: 125 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRK 165
+ EP RCRRTDGKKWRCS KYCERHMHRGR RSRK
Sbjct: 87 ETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRK 127
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 83 LVAGVPVPPDLVLPIRRGLDSLAARFYNHPALGYGPYFGKKLDPEPGRCRRTDGKKWRCS 142
L G+ PD VL R G G + D EPGRCRRTDGKKWRCS
Sbjct: 279 LFHGIHFSPDTVLQER----------------GCFRLQGVETDNEPGRCRRTDGKKWRCS 322
Query: 143 KEAAPDSKYCERHMHRGRNRSRKPVET 169
K+ KYC++HMHRG + + PV+T
Sbjct: 323 KDVLSGQKYCDKHMHRGMKK-KHPVDT 348
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,372,191
Number of extensions: 289569
Number of successful extensions: 487
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 10
Length of query: 394
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,337,553
Effective search space: 2442903029
Effective search space used: 2442903029
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 113 (48.1 bits)