BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0701300 Os02g0701300|AK063983
(394 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0701300 Similar to Transcription activator GRF2 (Fragm... 630 0.0
Os06g0116200 Similar to Transcription activator GRF3 (Fragm... 236 2e-62
Os02g0776900 Growth-regulating factor 1 146 2e-35
Os03g0729500 Growth-regulating factor 6 131 8e-31
Os06g0204800 124 1e-28
Os02g0678800 Similar to Transcription activator 120 2e-27
Os11g0551900 Similar to Growth-regulating factor 8 116 3e-26
Os03g0674700 Similar to Growth-regulating factor 3 112 4e-25
Os07g0467500 Conserved hypothetical protein 107 1e-23
>Os02g0701300 Similar to Transcription activator GRF2 (Fragment)
Length = 394
Score = 630 bits (1625), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/394 (80%), Positives = 316/394 (80%)
Query: 1 MAMPYASLSPAVADHRXXXXXXXXXXXXFCRSTPLSAGGGGVAMGEDXXXXXXXXXXXXX 60
MAMPYASLSPAVADHR FCRSTPLSAGGGGVAMGED
Sbjct: 1 MAMPYASLSPAVADHRSSPAAATASLLPFCRSTPLSAGGGGVAMGEDAPMTARWPPAAAA 60
Query: 61 XXXXXXXXQYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLAARFYNHPALGYGPYF 120
QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLAARFYNHPALGYGPYF
Sbjct: 61 RLPPFTAAQYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLAARFYNHPALGYGPYF 120
Query: 121 GKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVETXXXXXXXXXXX 180
GKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVET
Sbjct: 121 GKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVETQLVAQSQPPSS 180
Query: 181 XXXXXXXXXXXXXXXXXFQNHSLYPAIAGSNXXXXXRNMPSSFGSALGSQLHMDNAAPYA 240
FQNHSLYPAIAGSN RNMPSSFGSALGSQLHMDNAAPYA
Sbjct: 181 VVGSAAAPLAAASNGSSFQNHSLYPAIAGSNGGGGGRNMPSSFGSALGSQLHMDNAAPYA 240
Query: 241 AVGGGTGKDLRYTAYGTRSLADEQSQLITEAINTSIENPWRLLPSQNSPFPLSSYSQLGA 300
AVGGGTGKDLRYTAYGTRSLADEQSQLITEAINTSIENPWRLLPSQNSPFPLSSYSQLGA
Sbjct: 241 AVGGGTGKDLRYTAYGTRSLADEQSQLITEAINTSIENPWRLLPSQNSPFPLSSYSQLGA 300
Query: 301 LSDLGQNTPSSLSKVQRQPLSFFGNDYAAVDSVKQENQTLRPFFDEWPKGRDSWSDLADE 360
LSDLGQNTPSSLSKVQRQPLSFFGNDYAAVDSVKQENQTLRPFFDEWPKGRDSWSDLADE
Sbjct: 301 LSDLGQNTPSSLSKVQRQPLSFFGNDYAAVDSVKQENQTLRPFFDEWPKGRDSWSDLADE 360
Query: 361 NANLSSFSGTQLSISIPMXXXXXXXXXXXXTNGD 394
NANLSSFSGTQLSISIPM TNGD
Sbjct: 361 NANLSSFSGTQLSISIPMASSDFSAASSRSTNGD 394
>Os06g0116200 Similar to Transcription activator GRF3 (Fragment)
Length = 348
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/334 (44%), Positives = 182/334 (54%), Gaps = 42/334 (12%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIR---------RGLDSLAARFYNH---PALGY 116
Q+ ELEQQALIYKYLVAGVPVP DL+LPIR + AA FY+H P+L Y
Sbjct: 29 QWAELEQQALIYKYLVAGVPVPGDLLLPIRPHSSAAATYSFANPAAAPFYHHHHHPSLSY 88
Query: 117 GPYFGKKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVETXXXXXXX 176
Y+GKKLDPEP RCRRTDGKKWRCSKEA PDSKYCERHMHRGRNRSRKPVE+
Sbjct: 89 YAYYGKKLDPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVESKTAAPAP 148
Query: 177 XXXXXXXXXXXXXXXXXXXXXFQNHSLYPAIAGSNXXXXXRNMPSSFGSALGSQLHMDNA 236
H + + S G A SQ H+D
Sbjct: 149 QSQPQLSNVTTA-----------THDTDAPLPSLTVGAKTHGL--SLGGAGSSQFHVDAP 195
Query: 237 APYAAVGGGTGKDLRYTAYGTRSLADEQSQLITEAINTSIENPWRLLPSQNSPFPLS--- 293
+ + G D+ ++ + + + + I ++S W LPS P+P+S
Sbjct: 196 SYGSKYSLGAKADVGELSFFSGASGNTRGFTIDSPTDSS----WHSLPSSVPPYPMSKPR 251
Query: 294 ---------SYSQLGALSDLGQNTPSSLSKVQRQPLSFFGNDYAAVDSVKQENQTLRPFF 344
SYS L +LGQ T +SLS+ Q + SF G + +VK ENQ LRPFF
Sbjct: 252 DSGLLPGAYSYSHLEPSQELGQVTIASLSQEQER-RSFGGGAGGMLGNVKHENQPLRPFF 310
Query: 345 DEWPKGRDSWSDLADENANLSSFSGTQLSISIPM 378
DEWP RDSWS++ +E +N +SFS TQLSISIPM
Sbjct: 311 DEWPGRRDSWSEMDEERSNQTSFSTTQLSISIPM 344
>Os02g0776900 Growth-regulating factor 1
Length = 397
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 86/111 (77%), Gaps = 11/111 (9%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRG--LDSLAAR-----FYNHPALGYGPY-- 119
Q++ELE QALIYKY+ +G P+P DL+LP+RR LDS A F P+LG+G +
Sbjct: 23 QWQELEHQALIYKYMASGTPIPSDLILPLRRSFLLDSALATSPSLAFPPQPSLGWGCFGM 82
Query: 120 -FGKKL-DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168
FG+K DPEPGRCRRTDGKKWRCSKEA PDSKYCE+HMHRG+NRSRKPVE
Sbjct: 83 GFGRKAEDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 133
>Os03g0729500 Growth-regulating factor 6
Length = 456
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 75/104 (72%), Gaps = 4/104 (3%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDS-LAARFYNHPALGYGPY---FGKKL 124
Q+ ELE QALIYKYL A PVP L++PIRR L S + ++ LG+G + +
Sbjct: 16 QWIELEHQALIYKYLAANSPVPHSLLIPIRRSLTSPYSPAYFGSSTLGWGSFQLGYSGSA 75
Query: 125 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168
DPEPGRCRRTDGKKWRCS++A D KYCERHM+RGR+RSRK VE
Sbjct: 76 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVE 119
>Os06g0204800
Length = 317
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 84/115 (73%), Gaps = 15/115 (13%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRG--------LDSLAARFYNHPALGYGPY- 119
Q++ELE QALIYKY+ AG PVPPDL+L +R +D++ + + LG+G Y
Sbjct: 15 QWQELEHQALIYKYMAAGAPVPPDLLLHLRHRAAAAAAADVDTVPSLAFPPHHLGWGCYG 74
Query: 120 -----FGKKL-DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168
+G+++ DPEPGRCRRTDGKKWRCS+EA +SKYCE+HMHRG+NRSRKPVE
Sbjct: 75 AAAAQYGRRVEDPEPGRCRRTDGKKWRCSREAYGESKYCEKHMHRGKNRSRKPVE 129
>Os02g0678800 Similar to Transcription activator
Length = 211
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 72/106 (67%), Gaps = 6/106 (5%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLA---ARFYNHPALGYGPY---FGK 122
Q +ELE Q LIY+Y AG PVP LVLPI + + S + RF + +G G +
Sbjct: 73 QQQELEHQVLIYRYFAAGAPVPVHLVLPIWKSVASSSFGPHRFPSLAVMGLGNLCFDYRS 132
Query: 123 KLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168
++P+PGRCRRTDGKKWRCS++ P KYCERH+HRGR RSRKPVE
Sbjct: 133 SMEPDPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVE 178
>Os11g0551900 Similar to Growth-regulating factor 8
Length = 409
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 69/100 (69%), Gaps = 10/100 (10%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLAARFYNHPALGYGPYFGKKLDPEP 128
Q+ ELE QALIYK++ A V VP L+LPIRR L HP G+G + D EP
Sbjct: 112 QWMELEHQALIYKHIAANVSVPSSLLLPIRRSL---------HP-WGWGSFPPGCADVEP 161
Query: 129 GRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168
RCRRTDGKKWRCS++A D KYCERH++RGR+RSRK VE
Sbjct: 162 RRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVE 201
>Os03g0674700 Similar to Growth-regulating factor 3
Length = 426
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRRGLDSLAARFYNHPALGYGPYFGKKLDPEP 128
Q+ ELE QALIYKYL A P+P L++ I + S A R P Y + DPEP
Sbjct: 97 QWMELEHQALIYKYLNAKAPIPSSLLISISKSFRSSANRMSWRPL--YQGFPNADSDPEP 154
Query: 129 GRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVE 168
GRCRRTDGKKWRCSKEA D KYCERH++R R+RSRKPVE
Sbjct: 155 GRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVE 194
>Os07g0467500 Conserved hypothetical protein
Length = 269
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 66/101 (65%), Gaps = 9/101 (8%)
Query: 69 QYEELEQQALIYKYLVAGVPVPPDLVLPIRR---GLDSLAARFYNHPAL-GYGPY---FG 121
Q +ELEQQ+ +Y+Y+ A VPVP LV PI + G S A+ Y P L G FG
Sbjct: 119 QLQELEQQSRVYQYMAARVPVPTHLVFPIWKSVTGASSEGAQKY--PTLMGLATLCLDFG 176
Query: 122 KKLDPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNR 162
K +PEPGRCRRTDGKKWRC + A + KYCERHMHRGR R
Sbjct: 177 KNPEPEPGRCRRTDGKKWRCWRNAIANEKYCERHMHRGRKR 217
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,227,480
Number of extensions: 492421
Number of successful extensions: 866
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 855
Number of HSP's successfully gapped: 10
Length of query: 394
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 291
Effective length of database: 11,657,759
Effective search space: 3392407869
Effective search space used: 3392407869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)