BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0462200 Os07g0462200|AK059964
(185 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0462200 Protein of unknown function DUF1218 family pro... 293 4e-80
Os09g0281300 Protein of unknown function DUF1218 family pro... 132 1e-31
Os04g0678200 Protein of unknown function DUF1218 family pro... 129 9e-31
Os08g0261100 Protein of unknown function DUF1218 family pro... 109 1e-24
Os10g0495900 Protein of unknown function DUF1218 family pro... 68 5e-12
>Os07g0462200 Protein of unknown function DUF1218 family protein
Length = 185
Score = 293 bits (751), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 151/185 (81%), Positives = 151/185 (81%)
Query: 1 MASIIVLASVLLLDVIAFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDIXXXXXXXXXX 60
MASIIVLASVLLLDVIAFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDI
Sbjct: 1 MASIIVLASVLLLDVIAFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDIATGYGVGALL 60
Query: 61 XXXXXXXXXXXXSKCFCCGRGLKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHT 120
SKCFCCGRGLKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHT
Sbjct: 61 LLAAAQAVVMLASKCFCCGRGLKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHT 120
Query: 121 RYRGMFVGESVSCETVRKGVXXXXXXXXXXXXILSEFYYVSYSKSRDAAGGAPYGGSNIG 180
RYRGMFVGESVSCETVRKGV ILSEFYYVSYSKSRDAAGGAPYGGSNIG
Sbjct: 121 RYRGMFVGESVSCETVRKGVFAAGAAFTFFTAILSEFYYVSYSKSRDAAGGAPYGGSNIG 180
Query: 181 MGTYS 185
MGTYS
Sbjct: 181 MGTYS 185
>Os09g0281300 Protein of unknown function DUF1218 family protein
Length = 190
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 105/185 (56%), Gaps = 2/185 (1%)
Query: 2 ASIIVLASVLLLDVIAFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDIXXXXXXXXXXX 61
+SI+V V+ L + AFG A+AAE+RRS ++ DS +CVYDSDI
Sbjct: 7 SSILVHILVIALCLTAFGFAIAAERRRSTGSIVTDSFN-STFCVYDSDIATGYGVGAFLF 65
Query: 62 XXXXXXXXXXXSKCFCCGRGLKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHTR 121
+KC C G+ L PGGSRA ++I F +W+TF+IAE+CL+AG+ +NAYHTR
Sbjct: 66 LLSGQSLLMVVTKCMCFGKPLAPGGSRAWSIIYFASSWVTFMIAESCLIAGATKNAYHTR 125
Query: 122 YRGMFVGESVSCETVRKGVXXXXXXXXXXXXILSEFYYVSYSKSR-DAAGGAPYGGSNIG 180
YR M S +CE++RKGV IL+ ++Y+ Y+KS AA N+G
Sbjct: 126 YRHMVYVGSWTCESLRKGVFIAGAVFVVFTMILNVYFYMYYTKSTSQAAKKINKTTPNVG 185
Query: 181 MGTYS 185
M Y+
Sbjct: 186 MTGYA 190
>Os04g0678200 Protein of unknown function DUF1218 family protein
Length = 183
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 97/181 (53%), Gaps = 1/181 (0%)
Query: 1 MASIIVLASVLLLDVIAFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDIXXXXXXXXXX 60
MASII++ V +LD +AF LA+ AE+RRS AT + D+ YCVY SD
Sbjct: 1 MASIILVVVVFVLDALAFVLAIGAEKRRSTATFSEDTSG-RQYCVYSSDAATGYGIGALL 59
Query: 61 XXXXXXXXXXXXSKCFCCGRGLKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHT 120
++CFCCGR L PG RA + F+ W TF+IAE CL+AGS+RNAYHT
Sbjct: 60 LLLAGQAVVMVVTRCFCCGRALSPGRWRAFSGFCFIVCWFTFVIAELCLLAGSVRNAYHT 119
Query: 121 RYRGMFVGESVSCETVRKGVXXXXXXXXXXXXILSEFYYVSYSKSRDAAGGAPYGGSNIG 180
+Y + + C +RKGV + +E +Y+ ++K+R AA P IG
Sbjct: 120 KYSTLVISGPPRCAMLRKGVFAAGAAFTFLTALFAELHYLFFAKARHAAAVPPPIVGGIG 179
Query: 181 M 181
M
Sbjct: 180 M 180
>Os08g0261100 Protein of unknown function DUF1218 family protein
Length = 199
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 22 VAAEQRRSKATVTPDSEKLYDYCVYDSDIXXXXXXXXXXXXXXXXXXXXXXSKCFCCGRG 81
V AE+RRS V PD L YC+YD+D ++C C G
Sbjct: 30 VGAERRRSTGKVVPDEYDLRSYCLYDTDASTVYGVAAFFVLLLAQALVTAATRCLCLGPA 89
Query: 82 LKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHTRYRGMFVGES-VSCETVRKGV 140
L SR CA+ F+ +W+TFL AEACL+ GS+RNAYHT+Y G ++ V+C T+RKGV
Sbjct: 90 LS---SRGCAVASFVLSWITFLTAEACLIGGSVRNAYHTKYLGYYMKHDLVTCATLRKGV 146
Query: 141 XXXXXXXXXXXXILSEFYYVSYSKSRDAAGGAPYGGSNIGM 181
+ S YY SY SR A GG + +GM
Sbjct: 147 FAAAAALMLINLLASLMYYWSY--SRAATGGFIKHQNEVGM 185
>Os10g0495900 Protein of unknown function DUF1218 family protein
Length = 118
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 96 LFAWLTFLIAEACLMAGSIRNAYHTRYRGMFVGESVSCETVRKGVXXXXXXXXXXXXILS 155
L LTFLIAE+CL+AG +++AYHTRYR +F CETVR+G +L+
Sbjct: 32 LLLRLTFLIAESCLLAGLVQSAYHTRYRKVFFENPPDCETVRRGTFGAGAAFSLITCVLT 91
Query: 156 EFYYVSYSKSRDAAGGAPYGGSNIGMGTYS 185
YY +SKSR + + IGM YS
Sbjct: 92 GAYYFYFSKSRVSYARRE---ATIGMSPYS 118
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,227,215
Number of extensions: 159209
Number of successful extensions: 540
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 5
Length of query: 185
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 90
Effective length of database: 12,075,471
Effective search space: 1086792390
Effective search space used: 1086792390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)