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Os07g0462200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1218 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0602) R2 : 0.512
β1 : -3.69 (0.225) R2dD : 0.314 R2D : 0.136
β2 : 1.25 (0.146) R2dC : 0.0807 R2C : 0.0261
β3 : 2.5 (0.166) R2dE : 0.27 R2E : 0.106
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.722 (0.129) R2dN8 : 0.0446 R2N8 : 0.0295
σ : 1.12
deviance : 581.31
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_____
C
peak time of C : 13.1
E
wheather : temperature
threshold : 28.6
memory length : 1231
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
577.91 1.13 10.5 -3.85 1.23 2.59 1.05 -0.808 -0.618 12.9 29.21 1215 -- --
576.97 1.12 10.5 -3.74 1.25 2.53 1.08 -- -0.729 12.9 28.51 1224 -- --
580.79 1.12 10.5 -4.24 1.29 2.84 -- -2.97 -0.737 13 28.68 1214 -- --
581.31 1.12 10.5 -3.69 1.25 2.5 -- -- -0.722 13.1 28.6 1231 -- --
669.59 1.21 10.6 -4.22 -- 2.5 -- -2.56 -0.83 -- 28.53 1331 -- --
869.47 1.38 10.5 -3.01 0.835 -- 0.443 -- -0.986 12.9 -- -- -- --
870.15 1.38 10.5 -2.99 0.838 -- -- -- -0.982 13.1 -- -- -- --
670.18 1.21 10.5 -3.66 -- 2.21 -- -- -0.671 -- 29.12 1306 -- --
918.4 1.41 10.4 -- 1.23 1.93 -- -- -0.235 13.2 30.4 1191 -- --
913.72 1.41 10.5 -3.02 -- -- -- -- -0.999 -- -- -- -- --
1105.82 1.56 10.5 -- 0.889 -- -- -- -0.649 13.2 -- -- -- --
1003.99 1.48 10.4 -- -- 1.71 -- -- -0.291 -- 30.6 1221 -- --
1154.65 1.59 10.5 -- -- -- -- -- -0.664 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 580.28 humidity 80 1440 < th dose dependent rect. 16 5
8 585.50 humidity 70 720 > th dose independent sin 12 NA
11 586.22 humidity 80 1440 < th dose dependent rect. 16 16
18 587.73 humidity 70 1440 < th dose independent sin 13 NA
31 589.57 humidity 80 1440 < th dose dependent sin 14 NA
54 594.24 humidity 80 1440 < th dose dependent rect. 16 1
57 594.77 radiation 20 1440 > th dose independent rect. 16 15
58 594.79 humidity 70 720 > th dose independent rect. 16 10
62 595.17 humidity 70 1440 < th dose independent rect. 15 16
63 595.26 humidity 70 1440 < th dose independent rect. 15 5
81 596.29 humidity 70 720 > th dose independent rect. 18 9
98 598.66 radiation 20 1440 > th dose dependent rect. 16 16
99 598.77 temperature 30 1440 > th dose dependent sin 16 NA
100 598.83 temperature 30 1440 < th dose independent rect. 17 19
106 599.22 humidity 70 1440 < th dose independent rect. 18 13
109 599.35 humidity 70 1440 < th dose independent rect. 18 2
121 599.42 temperature 30 1440 > th dose dependent rect. 14 22
130 599.55 humidity 70 1440 > th dose independent rect. 15 16
135 599.66 humidity 70 1440 > th dose independent rect. 15 6
136 599.68 humidity 70 1440 > th dose independent rect. 15 8
142 599.75 temperature 30 1440 > th dose dependent rect. 13 6
158 599.83 temperature 30 1440 > th dose dependent rect. 11 8
214 600.35 temperature 30 1440 > th dose independent rect. 17 19
238 600.67 temperature 30 1440 > th dose dependent no NA NA
335 600.91 temperature 30 1440 > th dose independent rect. 16 3
391 601.26 temperature 30 1440 > th dose dependent sin 11 NA
401 601.66 temperature 30 1440 < th dose independent sin 11 NA
427 602.00 humidity 80 1440 < th dose dependent rect. 11 22
439 602.44 temperature 30 1440 > th dose independent sin 11 NA
440 602.45 temperature 30 1440 < th dose independent rect. 16 12
441 602.50 temperature 30 1440 < th dose independent rect. 16 8
445 602.56 temperature 30 1440 < th dose independent rect. 16 5
447 602.59 radiation 20 1440 < th dose independent rect. 16 15
453 602.72 temperature 30 1440 < th dose independent rect. 16 16
462 602.85 humidity 70 1440 > th dose independent rect. 18 7
468 602.99 humidity 70 1440 > th dose independent rect. 18 13
473 603.19 humidity 70 1440 > th dose independent rect. 18 3
475 603.21 humidity 70 1440 > th dose independent rect. 18 5
495 603.82 humidity 50 1440 > th dose dependent rect. 6 15
502 603.95 humidity 50 1440 > th dose dependent rect. 6 17
503 603.98 humidity 90 1440 < th dose dependent rect. 5 18
528 604.22 humidity 50 1440 > th dose dependent rect. 11 12
562 604.51 humidity 50 1440 > th dose dependent rect. 11 10
563 604.51 humidity 80 1440 < th dose dependent rect. 11 10
608 605.15 humidity 50 1440 > th dose dependent sin 20 NA
617 605.28 temperature 25 720 > th dose dependent rect. 17 15
640 605.78 radiation 20 1440 < th dose independent rect. 16 12
658 606.01 humidity 50 1440 > th dose dependent rect. 15 6
708 606.17 radiation 20 1440 > th dose independent rect. 16 1
731 606.25 radiation 20 1440 < th dose independent rect. 16 8
750 606.60 radiation 20 1440 < th dose independent rect. 16 5
754 606.74 radiation 20 1440 < th dose independent rect. 16 1
767 606.90 temperature 30 1440 < th dose independent rect. 9 3
801 607.35 humidity 50 1440 > th dose dependent rect. 13 8
802 607.36 temperature 30 1440 < th dose independent rect. 9 19
807 607.39 temperature 30 1440 < th dose independent rect. 9 22
809 607.40 temperature 30 1440 < th dose independent rect. 9 16
810 607.42 temperature 30 1440 < th dose independent rect. 9 13
813 607.43 temperature 30 1440 < th dose independent rect. 9 10
860 607.94 humidity 50 1440 > th dose dependent rect. 13 10
864 608.04 temperature 30 1440 > th dose independent rect. 9 10
959 608.82 temperature 30 1440 > th dose independent rect. 9 3