BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0462200 Os07g0462200|AK059964
(185 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15480.1 | chr3:5226489-5227666 REVERSE LENGTH=176 174 2e-44
AT1G52910.1 | chr1:19708114-19709128 FORWARD LENGTH=176 172 1e-43
AT4G27435.1 | chr4:13723903-13724872 FORWARD LENGTH=174 168 1e-42
AT1G61065.1 | chr1:22490430-22491330 REVERSE LENGTH=181 137 3e-33
AT1G13380.1 | chr1:4589218-4590362 REVERSE LENGTH=189 123 7e-29
AT1G68220.1 | chr1:25570322-25571562 FORWARD LENGTH=202 101 2e-22
AT5G17210.1 | chr5:5656519-5657970 FORWARD LENGTH=210 54 6e-08
>AT3G15480.1 | chr3:5226489-5227666 REVERSE LENGTH=176
Length = 175
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 109/175 (62%), Gaps = 1/175 (0%)
Query: 1 MASIIVLASVLLLDVIAFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDIXXXXXXXXXX 60
MAS +V+ V +LD+IA GLA+AAEQRRS V D +K YDYCVY +DI
Sbjct: 1 MASKLVVIIVFILDLIAVGLAIAAEQRRSVGKVETDRDKQYDYCVYGTDIATSYGAGAFV 60
Query: 61 XXXXXXXXXXXXSKCFCCGRGLKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHT 120
S+CFCCG+ L PGGSRACA+ILFL W+ FLIAE CL+A SIRNAYHT
Sbjct: 61 LLFVSQVLIMAASRCFCCGKSLNPGGSRACAIILFLICWVFFLIAEMCLLAASIRNAYHT 120
Query: 121 RYRGMF-VGESVSCETVRKGVXXXXXXXXXXXXILSEFYYVSYSKSRDAAGGAPY 174
+YR M+ V + SCE +RKGV I+S+FYYV YS++RDA Y
Sbjct: 121 QYRKMWKVEDPPSCEVIRKGVFAAGAAFTLFTAIVSQFYYVCYSRARDAYQNPSY 175
>AT1G52910.1 | chr1:19708114-19709128 FORWARD LENGTH=176
Length = 175
Score = 172 bits (435), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 107/168 (63%), Gaps = 1/168 (0%)
Query: 1 MASIIVLASVLLLDVIAFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDIXXXXXXXXXX 60
MAS +V+ V +LD+IA GLA+AAEQRRS V PD EK +++C Y SDI
Sbjct: 1 MASKLVIIIVFILDLIAVGLAIAAEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFV 60
Query: 61 XXXXXXXXXXXXSKCFCCGRGLKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHT 120
S+CFCCG+ LKPGGSRAC ++LFL W+ FLIAE CL+AGSIRNAYHT
Sbjct: 61 LLFISQVIIMVASRCFCCGKALKPGGSRACGIMLFLICWVFFLIAEVCLLAGSIRNAYHT 120
Query: 121 RYRGMF-VGESVSCETVRKGVXXXXXXXXXXXXILSEFYYVSYSKSRD 167
YR M+ + SCE +RKGV I+S+FYY+SYS++RD
Sbjct: 121 TYRRMWNIENPPSCEVIRKGVFAAGASFALFTAIVSQFYYISYSRARD 168
>AT4G27435.1 | chr4:13723903-13724872 FORWARD LENGTH=174
Length = 173
Score = 168 bits (426), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 109/174 (62%), Gaps = 1/174 (0%)
Query: 1 MASIIVLASVLLLDVIAFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDIXXXXXXXXXX 60
MAS IV A V + ++IAFGLAVAAEQRRS A V D+E Y+YCVYDSD
Sbjct: 1 MASKIVSAIVFVFNLIAFGLAVAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFL 60
Query: 61 XXXXXXXXXXXXSKCFCCGRGLKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHT 120
S+CFCCG+ LKPGGSRA ALILF+ +W+ FLIAE CL+AGS+ NAYHT
Sbjct: 61 FSVASQILIMLVSRCFCCGKPLKPGGSRALALILFIVSWMFFLIAEICLLAGSVENAYHT 120
Query: 121 RYRGMFVGESVSCETVRKGVXXXXXXXXXXXXILSEFYYVSYSKSRDAAGGAPY 174
+YR MF+ C+T+RKGV I+S+FYY Y + +A+ +PY
Sbjct: 121 KYRTMFMDNPPDCQTLRKGVFAAGASFVFFNAIVSQFYYFFYFSAAEAS-LSPY 173
>AT1G61065.1 | chr1:22490430-22491330 REVERSE LENGTH=181
Length = 180
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 100/167 (59%), Gaps = 1/167 (0%)
Query: 1 MASIIVLASVLLLDVIAFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDIXXXXXXXXXX 60
MAS+++L V + D+IAFGLAVAAEQRR+ ++ +S L YCVYD DI
Sbjct: 1 MASVLLLLLVFVFDLIAFGLAVAAEQRRTTWQISRESRDL-SYCVYDKDIATGLGVGSFL 59
Query: 61 XXXXXXXXXXXXSKCFCCGRGLKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHT 120
S+C CCGR L P GSR+ A+ LF+ W+ F IA+ CL+AGS+RNAYHT
Sbjct: 60 VLLASQLLIMVASRCLCCGRALTPSGSRSWAIFLFITTWVFFFIAQVCLLAGSVRNAYHT 119
Query: 121 RYRGMFVGESVSCETVRKGVXXXXXXXXXXXXILSEFYYVSYSKSRD 167
+YR F S SC ++RKGV I+SE YYV+ S+++D
Sbjct: 120 KYRVYFGNTSPSCRSLRKGVFGAGAAFIVLTGIVSELYYVTLSRAKD 166
>AT1G13380.1 | chr1:4589218-4590362 REVERSE LENGTH=189
Length = 188
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 100/186 (53%), Gaps = 5/186 (2%)
Query: 2 ASIIVLASVLLLDVIAFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDIXXXXXXXXXXX 61
AS +V V+ L ++AFG ++AAE+RRS D +CVYDSD+
Sbjct: 6 ASTLVFILVVALSLVAFGFSIAAERRRSIGKSIQDPITNTTFCVYDSDVATGYGVGAFLF 65
Query: 62 XXXXXXXXXXXSKCFCCGRGLKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHTR 121
+KC C GR L PG RA ++I F+ +W+TFL+AEAC++AG+ +NAYHT+
Sbjct: 66 LLSSESLLMSVTKCMCFGRPLAPGSDRAWSIIYFISSWMTFLVAEACVIAGATKNAYHTK 125
Query: 122 YRGMFVGESVSCETVRKGVXXXXXXXXXXXXILSEFYYVSYSK--SRDAAGGAPYGGSNI 179
Y ++ SC ++RKG+ +L+ +YY+ ++K S A A SNI
Sbjct: 126 Y---LSSQTFSCASLRKGIFIAGAVFIVATMVLNVYYYMYFTKSVSSPPAHKANRSSSNI 182
Query: 180 GMGTYS 185
GM Y+
Sbjct: 183 GMAGYA 188
>AT1G68220.1 | chr1:25570322-25571562 FORWARD LENGTH=202
Length = 201
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 4/186 (2%)
Query: 3 SIIVLASVLLLDVIAFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDIXXXXXXXXXXXX 62
S+ +L V L ++AF A AE+RRS A PD C Y ++
Sbjct: 4 SVSILTVVTALHLLAFVFAFGAERRRSTAVPVPDQYDEKTICKYGTEASTVYGMSAFGLL 63
Query: 63 XXXXXXXXXXSKCFCCGRGLKPGGS-RACALILFLFAWLTFLIAEACLMAGSIRNAYHTR 121
+KC C G+GL G S A++ F+ +W++FL AEACL+ GS RNAYHT+
Sbjct: 64 LVSQAVVNGVTKCLCFGKGLVTGTSYTVWAIVFFVVSWVSFLGAEACLLGGSARNAYHTK 123
Query: 122 YRGMFVGESVSCETVRKGVXXXXXXXXXXXXILSEFYYVSYSKSRDAAGGAPY--GGSNI 179
G++ G+ +SC + GV I + YY+++SK+ D G + G NI
Sbjct: 124 SEGIYKGKELSCAVLPVGVFAAGAAFTLMSLIATILYYLAHSKA-DTGGWEKHQNDGINI 182
Query: 180 GMGTYS 185
GM T S
Sbjct: 183 GMTTPS 188
>AT5G17210.1 | chr5:5656519-5657970 FORWARD LENGTH=210
Length = 209
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 69/183 (37%), Gaps = 9/183 (4%)
Query: 5 IVLASVL----LLDVIAFGLAVAAEQRRSKATVTPDSEKLYDYCVYDSDIXXXXXXXXXX 60
IV+ VL LL + +A A +RS+ TVT C Y
Sbjct: 6 IVMCGVLFLLGLLSAVTAFVAEATRIKRSQVTVTVSDS--ITKCTYPRSPAFNLGFTSAL 63
Query: 61 XXXXXXXXXXXXSKCFCCGRGLKPGGSR-ACALILFLFAWLTFLIAEACLMAGSIRNAYH 119
S CFCC +G P S +LI F+ +W TF+IA L++G+ N H
Sbjct: 64 FLMMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSWFTFVIAFLVLLSGAALNDEH 123
Query: 120 TRYRGMFVGESVSCETVRKGVXXXXXXXXXXXXILSEFYYVSYSKSRDAAGGAPYGGSNI 179
T M G + C V+ GV L YY+ + ++ G+ I
Sbjct: 124 TE-ESMNAG-TYFCYIVKPGVFSTGAVLSLVTIALGIVYYLCLTSNKQIVAATTTQGTGI 181
Query: 180 GMG 182
MG
Sbjct: 182 AMG 184
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,158,519
Number of extensions: 93153
Number of successful extensions: 250
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 7
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)