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Os08g0261100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1218 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.024) R2 : 0.89
β1 : 0.829 (0.0876) R2dD : 0.0228 R2D : 0.02
β2 : 2.04 (0.088) R2dC : 0.28 R2C : 0.638
β3 : -1.87 (0.0892) R2dE : 0.225 R2E : 0.588
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.231 (0.0511) R2dN8 : 0.00703 R2N8 : -0.00274
σ : 0.447
deviance : 92.22
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C
peak time of C : 20.3
E
wheather : radiation
threshold : 0.7059
memory length : 181
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 0.152
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.57 0.432 10 0.862 2.03 -1.76 -0.407 -1.69 0.264 19.9 0.7961 125 22.3 --
88.52 0.438 10 0.851 2.05 -1.7 1.24 -- 0.273 20.7 0.8395 131 23.8 --
83.31 0.425 10 0.906 2.02 -1.87 -- -1.56 0.245 20 0.71 180 23.5 --
92.22 0.447 10 0.829 2.04 -1.87 -- -- 0.231 20.3 0.7059 181 0.152 --
121.49 0.513 9.98 0.882 -- -3.43 -- -1.32 0.235 -- -0.1743 220 22.4 --
121.3 0.516 10.1 0.874 3.43 -- 1.37 -- 0.2 21.4 -- -- -- --
128.03 0.53 10.1 0.826 3.43 -- -- -- 0.2 21.3 -- -- -- --
128.03 0.527 9.99 0.826 -- -3.42 -- -- 0.2 -- -1.572 237 22.6 --
110.96 0.491 10 -- 2.04 -1.87 -- -- 0.21 20.5 0.78 174 0.394 --
815.36 1.33 9.99 0.843 -- -- -- -- 0.186 -- -- -- -- --
146 0.565 10.1 -- 3.43 -- -- -- 0.108 21.4 -- -- -- --
146 0.563 10 -- -- -3.42 -- -- 0.108 -- -1.365 254 22.8 --
834.1 1.35 10 -- -- -- -- -- 0.0925 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.36 radiation 1.0 270 < th dose independent rect. 22 10
2 85.45 radiation 1.0 270 < th dose dependent rect. 22 10
23 86.31 radiation 1.0 90 > th dose independent sin 4 NA
24 86.31 radiation 1.0 90 < th dose independent sin 5 NA
32 86.55 radiation 30.0 270 < th dose independent rect. 18 15
34 86.58 radiation 1.0 90 < th dose independent rect. 1 9
41 86.69 radiation 10.0 90 < th dose dependent rect. 1 7
44 86.76 radiation 1.0 270 < th dose dependent sin 8 NA
49 86.87 radiation 1.0 90 > th dose independent rect. 5 10
71 87.37 radiation 1.0 90 < th dose independent rect. 1 14
74 87.55 radiation 1.0 90 < th dose dependent sin 4 NA
75 87.62 radiation 1.0 270 < th dose independent sin 8 NA
76 87.63 humidity 50.0 90 > th dose dependent rect. 6 19
82 87.91 atmosphere 995.0 90 > th dose dependent rect. 1 5
83 87.91 radiation 10.0 90 < th dose dependent rect. 1 10
92 88.02 radiation 30.0 270 < th dose dependent rect. 15 9
94 88.10 radiation 40.0 270 < th dose independent rect. 5 19
96 88.12 precipitation 0.1 270 < th dose independent rect. 4 9
97 88.12 precipitation 0.1 270 < th dose dependent rect. 4 9
101 88.23 temperature 15.0 270 > th dose independent rect. 23 6
102 88.29 temperature 15.0 270 > th dose independent rect. 13 15
103 88.30 radiation 40.0 270 < th dose independent rect. 4 9
104 88.30 wind 9.0 270 < th dose independent rect. 13 15
113 88.50 radiation 20.0 270 < th dose independent rect. 15 9
116 88.54 atmosphere 1000.0 90 > th dose independent rect. 1 5
124 88.60 temperature 30.0 270 < th dose independent rect. 23 6
125 88.60 humidity 50.0 270 > th dose independent rect. 23 6
128 88.60 atmosphere 995.0 270 > th dose independent rect. 23 6
132 88.60 temperature 10.0 270 > th dose independent rect. 5 18
135 88.61 radiation 1.0 270 > th dose independent sin 8 NA
136 88.61 wind 9.0 270 < th dose independent rect. 23 6
139 88.63 atmosphere 1015.0 270 < th dose independent rect. 23 6
141 88.67 humidity 50.0 270 > th dose independent rect. 4 9
146 88.77 radiation 10.0 270 < th dose dependent rect. 5 19
148 88.81 temperature 10.0 270 > th dose independent rect. 4 9
149 88.81 atmosphere 995.0 270 > th dose independent rect. 4 9
150 88.81 atmosphere 1015.0 270 < th dose independent rect. 4 9
155 88.85 radiation 40.0 270 < th dose dependent rect. 5 19
169 89.01 wind 9.0 270 < th dose independent rect. 9 9
171 89.01 precipitation 0.1 270 < th dose independent rect. 9 9
173 89.01 precipitation 0.1 270 < th dose dependent rect. 9 9
199 89.30 radiation 1.0 270 > th dose independent rect. 9 9
220 89.35 wind 9.0 270 < th dose independent rect. 4 9
223 89.40 wind 9.0 90 < th dose independent rect. 1 5
224 89.40 temperature 10.0 90 > th dose independent rect. 1 5
226 89.40 temperature 30.0 90 < th dose independent rect. 1 5
227 89.40 humidity 50.0 90 > th dose independent rect. 1 5
231 89.40 atmosphere 1010.0 90 < th dose independent rect. 1 5
233 89.40 radiation 20.0 90 < th dose independent rect. 1 5
243 89.42 precipitation 0.1 270 < th dose independent rect. 13 15
248 89.42 precipitation 0.1 270 < th dose dependent rect. 13 15
252 89.46 atmosphere 995.0 270 > th dose dependent rect. 1 2
256 89.53 humidity 90.0 270 < th dose independent rect. 9 9
257 89.53 wind 9.0 270 < th dose independent rect. 5 18
262 89.56 radiation 1.0 90 < th dose dependent rect. 1 14
270 89.61 precipitation 0.1 270 < th dose independent rect. 18 15
271 89.61 precipitation 0.1 270 < th dose dependent rect. 18 15
277 89.69 radiation 10.0 270 < th dose dependent rect. 9 15
286 89.81 temperature 15.0 270 > th dose independent rect. 9 9
288 89.82 humidity 60.0 30 > th dose independent rect. 6 19
292 89.87 atmosphere 1000.0 270 > th dose independent rect. 1 2
326 90.12 temperature 10.0 270 > th dose independent rect. 1 2
328 90.12 temperature 30.0 270 < th dose independent rect. 1 2
329 90.12 humidity 50.0 270 > th dose independent rect. 1 2
333 90.12 atmosphere 1010.0 270 < th dose independent rect. 1 2
335 90.12 radiation 1.0 270 < th dose independent rect. 1 2
340 90.12 temperature 10.0 270 > th dose independent rect. 3 22
341 90.12 radiation 1.0 270 < th dose dependent rect. 1 2
349 90.14 wind 9.0 270 < th dose independent rect. 1 2
352 90.16 atmosphere 1015.0 270 < th dose independent rect. 9 9
353 90.16 temperature 10.0 270 > th dose independent rect. 18 15
354 90.16 humidity 50.0 270 > th dose independent rect. 18 15
358 90.18 atmosphere 995.0 270 > th dose independent rect. 18 15
360 90.21 wind 9.0 270 < th dose independent rect. 18 15
365 90.22 precipitation 0.1 270 < th dose independent rect. 23 6
366 90.22 precipitation 0.1 270 < th dose dependent rect. 23 6
370 90.25 wind 9.0 270 < th dose independent rect. 24 16
374 90.28 precipitation 0.1 270 < th dose independent rect. 1 2
377 90.28 precipitation 0.1 270 < th dose dependent rect. 1 2
385 90.34 radiation 10.0 270 < th dose independent rect. 5 19
407 90.42 precipitation 0.1 90 < th dose independent rect. 1 5
410 90.42 precipitation 0.1 90 < th dose dependent rect. 1 5
448 90.65 temperature 10.0 270 > th dose dependent rect. 11 17
455 90.69 atmosphere 995.0 90 > th dose independent rect. 6 19
460 90.71 temperature 15.0 30 > th dose independent rect. 15 15
462 90.72 wind 9.0 1440 < th dose independent rect. 2 5
463 90.72 temperature 10.0 1440 > th dose independent rect. 2 5
466 90.72 temperature 30.0 1440 < th dose independent rect. 2 5
470 90.72 humidity 50.0 1440 > th dose independent rect. 2 5
475 90.72 atmosphere 995.0 1440 > th dose independent rect. 2 5
476 90.72 radiation 40.0 1440 < th dose independent rect. 2 5
480 90.72 temperature 10.0 1440 > th dose independent rect. 7 19
518 90.84 wind 1.0 90 > th dose independent rect. 1 5
524 90.88 atmosphere 1015.0 270 < th dose independent rect. 24 16
527 90.89 temperature 10.0 270 > th dose independent rect. 16 8
529 90.89 temperature 10.0 270 > th dose independent rect. 24 16
547 90.93 temperature 30.0 270 < th dose independent rect. 18 15
587 91.04 humidity 50.0 90 > th dose dependent rect. 1 5
642 91.24 wind 1.0 270 > th dose independent rect. 17 7
645 91.26 wind 9.0 270 < th dose independent rect. 16 8
651 91.27 precipitation 0.1 270 < th dose independent rect. 5 18
653 91.27 precipitation 0.1 270 < th dose dependent rect. 5 18
687 91.37 humidity 50.0 270 > th dose dependent rect. 4 20
689 91.38 humidity 70.0 270 > th dose independent rect. 4 20
704 91.44 humidity 50.0 270 > th dose independent rect. 17 7
712 91.50 wind 9.0 30 < th dose independent rect. 15 15
730 91.55 atmosphere 995.0 270 > th dose independent rect. 17 7
733 91.57 radiation 1.0 270 > th dose independent sin 20 NA
734 91.57 precipitation 0.1 30 < th dose independent rect. 6 9
737 91.57 precipitation 0.1 30 < th dose dependent rect. 6 9
780 91.71 temperature 10.0 30 > th dose independent rect. 6 9
782 91.71 atmosphere 995.0 30 > th dose independent rect. 6 9
783 91.71 atmosphere 1015.0 30 < th dose independent rect. 6 9
786 91.73 temperature 10.0 1440 > th dose independent rect. 7 9
790 91.73 temperature 10.0 1440 > th dose independent rect. 16 15
793 91.74 atmosphere 995.0 270 > th dose independent rect. 24 16
794 91.75 wind 9.0 270 < th dose independent rect. 3 22
834 91.80 wind 9.0 270 < th dose independent rect. 4 20
855 91.85 wind 1.0 270 > th dose independent rect. 23 6
858 91.86 radiation 40.0 10 < th dose independent rect. 15 15
879 91.95 humidity 50.0 270 > th dose dependent rect. 1 2
921 92.10 wind 9.0 30 < th dose independent rect. 6 9
939 92.16 precipitation 0.1 270 < th dose independent rect. 24 17
941 92.16 precipitation 0.1 270 < th dose dependent rect. 24 17