BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0261100 Os08g0261100|AK068711
(199 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G68220.1 | chr1:25570322-25571562 FORWARD LENGTH=202 129 1e-30
AT1G52910.1 | chr1:19708114-19709128 FORWARD LENGTH=176 107 4e-24
AT3G15480.1 | chr3:5226489-5227666 REVERSE LENGTH=176 105 2e-23
AT4G27435.1 | chr4:13723903-13724872 FORWARD LENGTH=174 103 6e-23
AT1G13380.1 | chr1:4589218-4590362 REVERSE LENGTH=189 99 1e-21
AT1G61065.1 | chr1:22490430-22491330 REVERSE LENGTH=181 95 3e-20
>AT1G68220.1 | chr1:25570322-25571562 FORWARD LENGTH=202
Length = 201
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Query: 31 GAERRRSTGKVVPDEYDLRSYCLYDTDASTVYGXXXXXXXXXXXXXXXXXXRCLCLGPAL 90
GAERRRST VPD+YD ++ C Y T+ASTVYG +CLC G L
Sbjct: 24 GAERRRSTAVPVPDQYDEKTICKYGTEASTVYGMSAFGLLLVSQAVVNGVTKCLCFGKGL 83
Query: 91 ----SSRGCAVASFVLSWITFLTAEACLIGGSVRNAYHTKYLGYYMKHDLVTCATLRKGV 146
S A+ FV+SW++FL AEACL+GGS RNAYHTK G Y +L +CA L GV
Sbjct: 84 VTGTSYTVWAIVFFVVSWVSFLGAEACLLGGSARNAYHTKSEGIYKGKEL-SCAVLPVGV 142
Query: 147 FXXXXXXXXXXXXXXXMYYWSYSRAATGGFIKHQNE-VGMSMT 188
F +YY ++S+A TGG+ KHQN+ + + MT
Sbjct: 143 FAAGAAFTLMSLIATILYYLAHSKADTGGWEKHQNDGINIGMT 185
>AT1G52910.1 | chr1:19708114-19709128 FORWARD LENGTH=176
Length = 175
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Query: 30 VGAERRRSTGKVVPDEYDLRSYCLYDTDASTVYGXXXXXXXXXXXXXXXXXXRCLCLGPA 89
+ AE+RRS GKVVPD +C Y +D +T YG RC C G A
Sbjct: 22 IAAEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFVLLFISQVIIMVASRCFCCGKA 81
Query: 90 LS---SRGCAVASFVLSWITFLTAEACLIGGSVRNAYHTKYLGYYMKHDLVTCATLRKGV 146
L SR C + F++ W+ FL AE CL+ GS+RNAYHT Y + + +C +RKGV
Sbjct: 82 LKPGGSRACGIMLFLICWVFFLIAEVCLLAGSIRNAYHTTYRRMWNIENPPSCEVIRKGV 141
Query: 147 FXXXXXXXXXXXXXXXMYYWSYSRAATG 174
F YY SYSRA G
Sbjct: 142 FAAGASFALFTAIVSQFYYISYSRARDG 169
>AT3G15480.1 | chr3:5226489-5227666 REVERSE LENGTH=176
Length = 175
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 30 VGAERRRSTGKVVPDEYDLRSYCLYDTDASTVYGXXXXXXXXXXXXXXXXXXRCLCLGPA 89
+ AE+RRS GKV D YC+Y TD +T YG RC C G +
Sbjct: 22 IAAEQRRSVGKVETDRDKQYDYCVYGTDIATSYGAGAFVLLFVSQVLIMAASRCFCCGKS 81
Query: 90 LS---SRGCAVASFVLSWITFLTAEACLIGGSVRNAYHTKYLGYYMKHDLVTCATLRKGV 146
L+ SR CA+ F++ W+ FL AE CL+ S+RNAYHT+Y + D +C +RKGV
Sbjct: 82 LNPGGSRACAIILFLICWVFFLIAEMCLLAASIRNAYHTQYRKMWKVEDPPSCEVIRKGV 141
Query: 147 FXXXXXXXXXXXXXXXMYYWSYSRA 171
F YY YSRA
Sbjct: 142 FAAGAAFTLFTAIVSQFYYVCYSRA 166
>AT4G27435.1 | chr4:13723903-13724872 FORWARD LENGTH=174
Length = 173
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 30 VGAERRRSTGKVVPDEYDLRSYCLYDTDASTVYGXXXXXXXXXXXXXXXXXXRCLCLGPA 89
V AE+RRST +VV D +YC+YD+D +T YG RC C G
Sbjct: 22 VAAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFLFSVASQILIMLVSRCFCCGKP 81
Query: 90 LS---SRGCAVASFVLSWITFLTAEACLIGGSVRNAYHTKYLGYYMKHDLVTCATLRKGV 146
L SR A+ F++SW+ FL AE CL+ GSV NAYHTKY +M + C TLRKGV
Sbjct: 82 LKPGGSRALALILFIVSWMFFLIAEICLLAGSVENAYHTKYRTMFMDNP-PDCQTLRKGV 140
Query: 147 FXXXXXXXXXXXXXXXMYYWSYSRAATG 174
F YY+ Y AA
Sbjct: 141 FAAGASFVFFNAIVSQFYYFFYFSAAEA 168
>AT1G13380.1 | chr1:4589218-4590362 REVERSE LENGTH=189
Length = 188
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 7/147 (4%)
Query: 30 VGAERRRSTGKVVPDEYDLRSYCLYDTDASTVYGXXXXXXXXXXXXXXXXXXRCLCLGPA 89
+ AERRRS GK + D ++C+YD+D +T YG +C+C G
Sbjct: 26 IAAERRRSIGKSIQDPITNTTFCVYDSDVATGYGVGAFLFLLSSESLLMSVTKCMCFGRP 85
Query: 90 L---SSRGCAVASFVLSWITFLTAEACLIGGSVRNAYHTKYLGYYMKHDLVTCATLRKGV 146
L S R ++ F+ SW+TFL AEAC+I G+ +NAYHTKYL +CA+LRKG+
Sbjct: 86 LAPGSDRAWSIIYFISSWMTFLVAEACVIAGATKNAYHTKYL----SSQTFSCASLRKGI 141
Query: 147 FXXXXXXXXXXXXXXXMYYWSYSRAAT 173
F YY ++++ +
Sbjct: 142 FIAGAVFIVATMVLNVYYYMYFTKSVS 168
>AT1G61065.1 | chr1:22490430-22491330 REVERSE LENGTH=181
Length = 180
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 76/145 (52%), Gaps = 5/145 (3%)
Query: 30 VGAERRRSTGKVVPDEYDLRSYCLYDTDASTVYGXXXXXXXXXXXXXXXXXXRCLCLGPA 89
V AE+RR+T ++ + DL SYC+YD D +T G RCLC G A
Sbjct: 22 VAAEQRRTTWQISRESRDL-SYCVYDKDIATGLGVGSFLVLLASQLLIMVASRCLCCGRA 80
Query: 90 LS---SRGCAVASFVLSWITFLTAEACLIGGSVRNAYHTKYLGYYMKHDLVTCATLRKGV 146
L+ SR A+ F+ +W+ F A+ CL+ GSVRNAYHTKY Y+ + +C +LRKGV
Sbjct: 81 LTPSGSRSWAIFLFITTWVFFFIAQVCLLAGSVRNAYHTKYRVYF-GNTSPSCRSLRKGV 139
Query: 147 FXXXXXXXXXXXXXXXMYYWSYSRA 171
F +YY + SRA
Sbjct: 140 FGAGAAFIVLTGIVSELYYVTLSRA 164
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.136 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,217,814
Number of extensions: 87305
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 6
Length of query: 199
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 106
Effective length of database: 8,556,881
Effective search space: 907029386
Effective search space used: 907029386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)