BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0261100 Os08g0261100|AK068711
(199 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0261100 Protein of unknown function DUF1218 family pro... 294 3e-80
Os07g0462200 Protein of unknown function DUF1218 family pro... 110 6e-25
Os09g0281300 Protein of unknown function DUF1218 family pro... 95 3e-20
Os04g0678200 Protein of unknown function DUF1218 family pro... 89 1e-18
>Os08g0261100 Protein of unknown function DUF1218 family protein
Length = 199
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 148/199 (74%), Positives = 148/199 (74%)
Query: 1 MAGFATSRPASXXXXXXXXXXXXXXXXXXVGAERRRSTGKVVPDEYDLRSYCLYDTDAST 60
MAGFATSRPAS VGAERRRSTGKVVPDEYDLRSYCLYDTDAST
Sbjct: 1 MAGFATSRPASLALAALLAFLNLFAFLLAVGAERRRSTGKVVPDEYDLRSYCLYDTDAST 60
Query: 61 VYGXXXXXXXXXXXXXXXXXXRCLCLGPALSSRGCAVASFVLSWITFLTAEACLIGGSVR 120
VYG RCLCLGPALSSRGCAVASFVLSWITFLTAEACLIGGSVR
Sbjct: 61 VYGVAAFFVLLLAQALVTAATRCLCLGPALSSRGCAVASFVLSWITFLTAEACLIGGSVR 120
Query: 121 NAYHTKYLGYYMKHDLVTCATLRKGVFXXXXXXXXXXXXXXXMYYWSYSRAATGGFIKHQ 180
NAYHTKYLGYYMKHDLVTCATLRKGVF MYYWSYSRAATGGFIKHQ
Sbjct: 121 NAYHTKYLGYYMKHDLVTCATLRKGVFAAAAALMLINLLASLMYYWSYSRAATGGFIKHQ 180
Query: 181 NEVGMSMTDYGLDKGGSMP 199
NEVGMSMTDYGLDKGGSMP
Sbjct: 181 NEVGMSMTDYGLDKGGSMP 199
>Os07g0462200 Protein of unknown function DUF1218 family protein
Length = 185
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 30 VGAERRRSTGKVVPDEYDLRSYCLYDTDASTVYGXXXXXXXXXXXXXXXXXXRCLCLGPA 89
V AE+RRS V PD L YC+YD+D +T YG +C C G
Sbjct: 22 VAAEQRRSKATVTPDSEKLYDYCVYDSDIATGYGVGALLLLAAAQAVVMLASKCFCCGRG 81
Query: 90 LS---SRGCAVASFVLSWITFLTAEACLIGGSVRNAYHTKYLGYYMKHDLVTCATLRKGV 146
L SR CA+ F+ +W+TFL AEACL+ GS+RNAYHT+Y G ++ V+C T+RKGV
Sbjct: 82 LKPGGSRACALILFLFAWLTFLIAEACLMAGSIRNAYHTRYRGMFVGES-VSCETVRKGV 140
Query: 147 FXXXXXXXXXXXXXXXMYYWSY--SRAATGGFIKHQNEVGM 185
F YY SY SR A GG + +GM
Sbjct: 141 FAAGAAFTFFTAILSEFYYVSYSKSRDAAGGAPYGGSNIGM 181
>Os09g0281300 Protein of unknown function DUF1218 family protein
Length = 190
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 30 VGAERRRSTGKVVPDEYDLRSYCLYDTDASTVYGXXXXXXXXXXXXXXXXXXRCLCLGPA 89
+ AERRRSTG +V D ++ ++C+YD+D +T YG +C+C G
Sbjct: 27 IAAERRRSTGSIVTDSFN-STFCVYDSDIATGYGVGAFLFLLSGQSLLMVVTKCMCFGKP 85
Query: 90 LS---SRGCAVASFVLSWITFLTAEACLIGGSVRNAYHTKYLGYYMKHDLV----TCATL 142
L+ SR ++ F SW+TF+ AE+CLI G+ +NAYHT+Y +H + TC +L
Sbjct: 86 LAPGGSRAWSIIYFASSWVTFMIAESCLIAGATKNAYHTRY-----RHMVYVGSWTCESL 140
Query: 143 RKGVFXXXXXXXXXXXXXXXMYYWSYSRA---ATGGFIKHQNEVGMS 186
RKGVF +Y Y+++ A K VGM+
Sbjct: 141 RKGVFIAGAVFVVFTMILNVYFYMYYTKSTSQAAKKINKTTPNVGMT 187
>Os04g0678200 Protein of unknown function DUF1218 family protein
Length = 183
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 30 VGAERRRSTGKVVPDEYDLRSYCLYDTDASTVYGXXXXXXXXXXXXXXXXXXRCLCLGPA 89
+GAE+RRST D R YC+Y +DA+T YG RC C G A
Sbjct: 22 IGAEKRRSTATFSEDTSG-RQYCVYSSDAATGYGIGALLLLLAGQAVVMVVTRCFCCGRA 80
Query: 90 LSS---RGCAVASFVLSWITFLTAEACLIGGSVRNAYHTKYLGYYMKHDLVTCATLRKGV 146
LS R + F++ W TF+ AE CL+ GSVRNAYHTKY + CA LRKGV
Sbjct: 81 LSPGRWRAFSGFCFIVCWFTFVIAELCLLAGSVRNAYHTKYSTLVISGP-PRCAMLRKGV 139
Query: 147 FXXXXXXXXXXXXXXXMYYWSYSRAATGGFIKHQNEVGMSMT 188
F ++Y +++A + G+ MT
Sbjct: 140 FAAGAAFTFLTALFAELHYLFFAKARHAAAVPPPIVGGIGMT 181
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,246,985
Number of extensions: 143937
Number of successful extensions: 194
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 4
Length of query: 199
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 103
Effective length of database: 12,023,257
Effective search space: 1238395471
Effective search space used: 1238395471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)