Os04g0678200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1218 family protein.
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Os04g0678200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1218 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.51 | 0.26 | 12.8 | -0.143 | 0.693 | 0.645 | -0.647 | -0.931 | -0.0325 | 18.9 | 20.99 | 1337 | -- | -- |
| 31.62 | 0.262 | 12.8 | -0.0126 | 0.695 | 0.701 | -0.694 | -- | 0.0132 | 19.2 | 16.53 | 5691 | -- | -- |
| 31.41 | 0.261 | 12.8 | -0.153 | 0.694 | 0.64 | -- | -1.1 | -0.0281 | 18.9 | 22.4 | 1301 | -- | -- |
| 32.4 | 0.265 | 12.8 | -0.0773 | 0.66 | 0.819 | -- | -- | -0.0499 | 19.1 | 13.75 | 8174 | -- | -- |
| 39.35 | 0.292 | 12.8 | -0.266 | -- | 1.12 | -- | -1.72 | -0.0999 | -- | 21.51 | 615 | -- | -- |
| 42.25 | 0.305 | 12.7 | 0.342 | 0.676 | -- | -0.637 | -- | 0.181 | 19.2 | -- | -- | -- | -- |
| 43.32 | 0.308 | 12.7 | 0.355 | 0.674 | -- | -- | -- | 0.179 | 19.3 | -- | -- | -- | -- |
| 41.98 | 0.302 | 12.8 | 0.1 | -- | 0.98 | -- | -- | -0.00387 | -- | 20.6 | 610 | -- | -- |
| 32.43 | 0.265 | 12.8 | -- | 0.662 | 0.785 | -- | -- | -0.0374 | 19.1 | 12 | 7968 | -- | -- |
| 67.4 | 0.384 | 12.7 | 0.343 | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
| 46.64 | 0.319 | 12.7 | -- | 0.67 | -- | -- | -- | 0.139 | 19.3 | -- | -- | -- | -- |
| 41.86 | 0.301 | 12.8 | -- | -- | 1.28 | -- | -- | -0.0271 | -- | 15.2 | 569 | -- | -- |
| 70.51 | 0.392 | 12.7 | -- | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 3 | 30.03 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 5 | 30.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 15 | 30.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 36 | 30.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 54 | 30.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 55 | 30.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 56 | 30.56 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 57 | 30.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 69 | 30.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 73 | 30.59 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 80 | 30.60 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 86 | 30.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 128 | 30.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 17 |
| 147 | 30.68 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 148 | 30.68 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 14 |
| 195 | 30.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 225 | 30.74 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 227 | 30.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 232 | 30.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 305 | 30.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 315 | 30.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 330 | 30.81 | temperature | 25 | 1440 | > th | dose independent | sin | 20 | NA |
| 354 | 30.82 | temperature | 25 | 1440 | < th | dose independent | sin | 20 | NA |
| 381 | 30.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 382 | 30.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 400 | 30.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 404 | 30.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 434 | 30.86 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 477 | 30.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 513 | 30.92 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 608 | 30.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 639 | 30.99 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 682 | 31.01 | temperature | 25 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 717 | 31.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 722 | 31.03 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 723 | 31.03 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 724 | 31.03 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 817 | 31.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 21 |
| 821 | 31.08 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 837 | 31.08 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 20 |
| 842 | 31.09 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 845 | 31.09 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 849 | 31.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 10 |
| 852 | 31.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 864 | 31.10 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 868 | 31.10 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 877 | 31.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 896 | 31.11 | temperature | 20 | 90 | > th | dose dependent | sin | 9 | NA |
| 951 | 31.13 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 952 | 31.13 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 987 | 31.14 | temperature | 30 | 1440 | < th | dose dependent | sin | 22 | NA |