BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0678200 Os04g0678200|AK106193
(183 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G27435.1 | chr4:13723903-13724872 FORWARD LENGTH=174 119 1e-27
AT3G15480.1 | chr3:5226489-5227666 REVERSE LENGTH=176 105 2e-23
AT1G61065.1 | chr1:22490430-22491330 REVERSE LENGTH=181 103 7e-23
AT1G52910.1 | chr1:19708114-19709128 FORWARD LENGTH=176 102 1e-22
AT1G13380.1 | chr1:4589218-4590362 REVERSE LENGTH=189 86 1e-17
AT1G68220.1 | chr1:25570322-25571562 FORWARD LENGTH=202 67 7e-12
AT5G17210.1 | chr5:5656519-5657970 FORWARD LENGTH=210 54 6e-08
>AT4G27435.1 | chr4:13723903-13724872 FORWARD LENGTH=174
Length = 173
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Query: 23 GAEKRRSTATFSEDTSGR-QYCVYSSDXXXXXXXXXXXXXXXXXXXXXXXTRCFCCGRAL 81
AE+RRSTA +DT + YCVY SD +RCFCCG+ L
Sbjct: 23 AAEQRRSTARVVQDTEVQYNYCVYDSDRATGYGVGAFLFSVASQILIMLVSRCFCCGKPL 82
Query: 82 SPGRWRAFSGFCFIVCWFTFVIAELCLLAGSVRNAYHTKYSTLVISGPPRCAMLRKGVXX 141
PG RA + FIV W F+IAE+CLLAGSV NAYHTKY T+ + PP C LRKGV
Sbjct: 83 KPGGSRALALILFIVSWMFFLIAEICLLAGSVENAYHTKYRTMFMDNPPDCQTLRKGVFA 142
Query: 142 XXXXXXXXXXXXXELHYLFFAKARHAAAVP 171
+ +Y F+ A A+ P
Sbjct: 143 AGASFVFFNAIVSQFYYFFYFSAAEASLSP 172
>AT3G15480.1 | chr3:5226489-5227666 REVERSE LENGTH=176
Length = 175
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Query: 23 GAEKRRSTATFSEDTSGR-QYCVYSSDXXXXXXXXXXXXXXXXXXXXXXXTRCFCCGRAL 81
AE+RRS D + YCVY +D +RCFCCG++L
Sbjct: 23 AAEQRRSVGKVETDRDKQYDYCVYGTDIATSYGAGAFVLLFVSQVLIMAASRCFCCGKSL 82
Query: 82 SPGRWRAFSGFCFIVCWFTFVIAELCLLAGSVRNAYHTKYSTL-VISGPPRCAMLRKGVX 140
+PG RA + F++CW F+IAE+CLLA S+RNAYHT+Y + + PP C ++RKGV
Sbjct: 83 NPGGSRACAIILFLICWVFFLIAEMCLLAASIRNAYHTQYRKMWKVEDPPSCEVIRKGVF 142
Query: 141 XXXXXXXXXXXXXXELHYLFFAKARHAAAVP 171
+ +Y+ +++AR A P
Sbjct: 143 AAGAAFTLFTAIVSQFYYVCYSRARDAYQNP 173
>AT1G61065.1 | chr1:22490430-22491330 REVERSE LENGTH=181
Length = 180
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 77/160 (48%), Gaps = 3/160 (1%)
Query: 24 AEKRRSTATFSEDTSGRQYCVYSSDXXXXXXXXXXXXXXXXXXXXXXXTRCFCCGRALSP 83
AE+RR+T S ++ YCVY D +RC CCGRAL+P
Sbjct: 24 AEQRRTTWQISRESRDLSYCVYDKDIATGLGVGSFLVLLASQLLIMVASRCLCCGRALTP 83
Query: 84 GRWRAFSGFCFIVCWFTFVIAELCLLAGSVRNAYHTKYSTLVISGPPRCAMLRKGVXXXX 143
R+++ F FI W F IA++CLLAGSVRNAYHTKY + P C LRKGV
Sbjct: 84 SGSRSWAIFLFITTWVFFFIAQVCLLAGSVRNAYHTKYRVYFGNTSPSCRSLRKGVFGAG 143
Query: 144 XXXXXXXXXXXELHYLFFAKARHAAAVPPPIVGGIGMTRM 183
EL+Y+ ++A+ P GI M+ +
Sbjct: 144 AAFIVLTGIVSELYYVTLSRAKDFQPSRDP---GIRMSSL 180
>AT1G52910.1 | chr1:19708114-19709128 FORWARD LENGTH=176
Length = 175
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 24 AEKRRSTATFSEDTSGR-QYCVYSSDXXXXXXXXXXXXXXXXXXXXXXXTRCFCCGRALS 82
AE+RRS D ++C Y SD +RCFCCG+AL
Sbjct: 24 AEQRRSVGKVVPDGEKEFEHCEYGSDIATSYGAGAFVLLFISQVIIMVASRCFCCGKALK 83
Query: 83 PGRWRAFSGFCFIVCWFTFVIAELCLLAGSVRNAYHTKYSTL-VISGPPRCAMLRKGVXX 141
PG RA F++CW F+IAE+CLLAGS+RNAYHT Y + I PP C ++RKGV
Sbjct: 84 PGGSRACGIMLFLICWVFFLIAEVCLLAGSIRNAYHTTYRRMWNIENPPSCEVIRKGVFA 143
Query: 142 XXXXXXXXXXXXXELHYLFFAKARHAAAVP 171
+ +Y+ +++AR P
Sbjct: 144 AGASFALFTAIVSQFYYISYSRARDGYQTP 173
>AT1G13380.1 | chr1:4589218-4590362 REVERSE LENGTH=189
Length = 188
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 24 AEKRRSTATFSED-TSGRQYCVYSSDXXXXXXXXXXXXXXXXXXXXXXXTRCFCCGRALS 82
AE+RRS +D + +CVY SD T+C C GR L+
Sbjct: 28 AERRRSIGKSIQDPITNTTFCVYDSDVATGYGVGAFLFLLSSESLLMSVTKCMCFGRPLA 87
Query: 83 PGRWRAFSGFCFIVCWFTFVIAELCLLAGSVRNAYHTKYSTLVISGPPRCAMLRKGVXXX 142
PG RA+S FI W TF++AE C++AG+ +NAYHTKY + S CA LRKG+
Sbjct: 88 PGSDRAWSIIYFISSWMTFLVAEACVIAGATKNAYHTKYLS---SQTFSCASLRKGIFIA 144
Query: 143 XXXXXXXXXXXXELHYLFFAKARHAAAVPP 172
+Y++F K+ + PP
Sbjct: 145 GAVFIVATMVLNVYYYMYFTKSVSS---PP 171
>AT1G68220.1 | chr1:25570322-25571562 FORWARD LENGTH=202
Length = 201
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Query: 23 GAEKRRSTATFSEDT-SGRQYCVYSSDXXXXXXXXXXXXXXXXXXXXXXXTRCFCCGRAL 81
GAE+RRSTA D + C Y ++ T+C C G+ L
Sbjct: 24 GAERRRSTAVPVPDQYDEKTICKYGTEASTVYGMSAFGLLLVSQAVVNGVTKCLCFGKGL 83
Query: 82 SPG-RWRAFSGFCFIVCWFTFVIAELCLLAGSVRNAYHTKYSTLVISGPPRCAMLRKGVX 140
G + ++ F+V W +F+ AE CLL GS RNAYHTK + CA+L GV
Sbjct: 84 VTGTSYTVWAIVFFVVSWVSFLGAEACLLGGSARNAYHTKSEGIYKGKELSCAVLPVGVF 143
Query: 141 XXXXXXXXXXXXXXELHYLFFAKA 164
L+YL +KA
Sbjct: 144 AAGAAFTLMSLIATILYYLAHSKA 167
>AT5G17210.1 | chr5:5656519-5657970 FORWARD LENGTH=210
Length = 209
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 74 CFCCGRALSPGR--WRAFSGFCFIVCWFTFVIAELCLLAGSVRNAYHTKYSTLVISGPPR 131
CFCC + +P R W S CF+V WFTFVIA L LL+G+ N HT+ S + +G
Sbjct: 78 CFCCRKGPAPSRSNW-IISLICFVVSWFTFVIAFLVLLSGAALNDEHTEES--MNAGTYF 134
Query: 132 CAMLRKGVXXXXXXXXXXXXXXXELHYLFFAKARHAAAVPPPIVGGIGM 180
C +++ GV ++YL + A GI M
Sbjct: 135 CYIVKPGVFSTGAVLSLVTIALGIVYYLCLTSNKQIVAATTTQGTGIAM 183
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.138 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,758,234
Number of extensions: 71224
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 7
Length of query: 183
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 91
Effective length of database: 8,584,297
Effective search space: 781171027
Effective search space used: 781171027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 108 (46.2 bits)