BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0271000 Os07g0271000|AK069636
(446 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0271000 Similar to GDP dissociation inhibitor protein ... 891 0.0
Os05g0418000 GDP dissociation inhibitor protein OsGDI1 767 0.0
Os05g0304400 Similar to GDP dissociation inhibitor protein ... 767 0.0
Os03g0277000 Similar to GDP dissociation inhibitor protein ... 724 0.0
Os01g0269100 Similar to Rab proteins geranylgeranyltransfer... 78 1e-14
>Os07g0271000 Similar to GDP dissociation inhibitor protein OsGDI1
Length = 446
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/429 (100%), Positives = 429/429 (100%)
Query: 1 MDVEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLNQLWKRFKGEGT 60
MDVEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLNQLWKRFKGEGT
Sbjct: 1 MDVEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLNQLWKRFKGEGT 60
Query: 61 PPAQIGASRDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVPS 120
PPAQIGASRDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVPS
Sbjct: 61 PPAQIGASRDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVPS 120
Query: 121 TDMEALKSPLMGLFEKRRAGKFFLFVQDYKENDPSTHKGYDLNKMTTKELISKYGLDDNT 180
TDMEALKSPLMGLFEKRRAGKFFLFVQDYKENDPSTHKGYDLNKMTTKELISKYGLDDNT
Sbjct: 121 TDMEALKSPLMGLFEKRRAGKFFLFVQDYKENDPSTHKGYDLNKMTTKELISKYGLDDNT 180
Query: 181 IDFIGHAVALHKEDNYLTEPAIDTVKRMKLYAESVGRFQGGSPYIYPLYGLGELPQGFAR 240
IDFIGHAVALHKEDNYLTEPAIDTVKRMKLYAESVGRFQGGSPYIYPLYGLGELPQGFAR
Sbjct: 181 IDFIGHAVALHKEDNYLTEPAIDTVKRMKLYAESVGRFQGGSPYIYPLYGLGELPQGFAR 240
Query: 241 LSAVYGGTYMLNKPECKIEFNDEGKVCGVTSEGETAKCKKVVCDPSYIPDKVRKVGKVFR 300
LSAVYGGTYMLNKPECKIEFNDEGKVCGVTSEGETAKCKKVVCDPSYIPDKVRKVGKVFR
Sbjct: 241 LSAVYGGTYMLNKPECKIEFNDEGKVCGVTSEGETAKCKKVVCDPSYIPDKVRKVGKVFR 300
Query: 301 AIAIMSHPIPNTADSHSVQIIIPQKQLGRKSDMYVFCCSYSHNVASKGKFIAFVSAQAES 360
AIAIMSHPIPNTADSHSVQIIIPQKQLGRKSDMYVFCCSYSHNVASKGKFIAFVSAQAES
Sbjct: 301 AIAIMSHPIPNTADSHSVQIIIPQKQLGRKSDMYVFCCSYSHNVASKGKFIAFVSAQAES 360
Query: 361 ENPAAELKPGIDLLGPVDELFIDTYDRFEPTNDPSSDNCFISTSYDATTHFESTVMDVLS 420
ENPAAELKPGIDLLGPVDELFIDTYDRFEPTNDPSSDNCFISTSYDATTHFESTVMDVLS
Sbjct: 361 ENPAAELKPGIDLLGPVDELFIDTYDRFEPTNDPSSDNCFISTSYDATTHFESTVMDVLS 420
Query: 421 IYTKITGKT 429
IYTKITGKT
Sbjct: 421 IYTKITGKT 429
>Os05g0418000 GDP dissociation inhibitor protein OsGDI1
Length = 445
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/429 (83%), Positives = 395/429 (92%)
Query: 1 MDVEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLNQLWKRFKGEGT 60
MD EYDVIVLGTGLKECILSGLLSVD LKVLHMDRNDYYGGDSTSLNLNQLWKRF+GE
Sbjct: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWKRFRGEDK 60
Query: 61 PPAQIGASRDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVPS 120
PPA +GASRDYNVDM+PKFMMANGTLVR LIHT VTKYLSFKAVDGSYVF+KGKIHKVP+
Sbjct: 61 PPAHLGASRDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPA 120
Query: 121 TDMEALKSPLMGLFEKRRAGKFFLFVQDYKENDPSTHKGYDLNKMTTKELISKYGLDDNT 180
TDMEALKSPLMGLFEKRRA FF++VQDY E DP TH+G DL MTT+ELI+KYGL D+T
Sbjct: 121 TDMEALKSPLMGLFEKRRARNFFIYVQDYDEADPKTHQGLDLTTMTTRELIAKYGLSDDT 180
Query: 181 IDFIGHAVALHKEDNYLTEPAIDTVKRMKLYAESVGRFQGGSPYIYPLYGLGELPQGFAR 240
+DFIGHA+ALH++D YL EPAIDTVKRMKLYAES+ RFQGGSPYIYPLYGLGELPQGFAR
Sbjct: 181 VDFIGHALALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFAR 240
Query: 241 LSAVYGGTYMLNKPECKIEFNDEGKVCGVTSEGETAKCKKVVCDPSYIPDKVRKVGKVFR 300
LSAVYGGTYMLNKP+CK+EF+ EGKVCGVTSEGETAKCKKVVCDPSY+P+KVRK+GKV R
Sbjct: 241 LSAVYGGTYMLNKPDCKVEFDMEGKVCGVTSEGETAKCKKVVCDPSYLPNKVRKIGKVAR 300
Query: 301 AIAIMSHPIPNTADSHSVQIIIPQKQLGRKSDMYVFCCSYSHNVASKGKFIAFVSAQAES 360
AIAIMSHPI NT DSHSVQII+PQKQLGRKSDMYVF CSY+HNVA KGKFIAFVS +AE+
Sbjct: 301 AIAIMSHPIANTNDSHSVQIILPQKQLGRKSDMYVFGCSYTHNVAPKGKFIAFVSTEAET 360
Query: 361 ENPAAELKPGIDLLGPVDELFIDTYDRFEPTNDPSSDNCFISTSYDATTHFESTVMDVLS 420
++P +ELKPGIDLLG VDELF D YDR+EP N+PS DNCF+STSYDATTHFE+TV DVL+
Sbjct: 361 DHPESELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDATTHFETTVTDVLN 420
Query: 421 IYTKITGKT 429
+YT ITGKT
Sbjct: 421 MYTLITGKT 429
>Os05g0304400 Similar to GDP dissociation inhibitor protein OsGDI2
Length = 445
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/428 (83%), Positives = 395/428 (92%)
Query: 1 MDVEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLNQLWKRFKGEGT 60
MD EYDVIVLGTGLKECILSGLLSVD LKVLHMDRNDYYGGDSTSLNLNQLWKRF+GE
Sbjct: 1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQLWKRFRGEDK 60
Query: 61 PPAQIGASRDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVPS 120
PPA +G+S+DYNVDM+PKFMMANGTLVR LIHT VTKYLSFKAVDGSYVF+KGKIHKVP+
Sbjct: 61 PPAHLGSSKDYNVDMVPKFMMANGTLVRTLIHTDVTKYLSFKAVDGSYVFSKGKIHKVPA 120
Query: 121 TDMEALKSPLMGLFEKRRAGKFFLFVQDYKENDPSTHKGYDLNKMTTKELISKYGLDDNT 180
TDMEALKSPLMGLFEKRRA FF++VQDY E DP TH+G DL MTT+ELI+KYGL D+T
Sbjct: 121 TDMEALKSPLMGLFEKRRARNFFIYVQDYNEADPKTHQGLDLTTMTTRELIAKYGLSDDT 180
Query: 181 IDFIGHAVALHKEDNYLTEPAIDTVKRMKLYAESVGRFQGGSPYIYPLYGLGELPQGFAR 240
+DFIGHA+ALH++D YL EPAIDTVKRMKLYAES+ RFQGGSPYIYPLYGLGELPQGFAR
Sbjct: 181 VDFIGHALALHRDDRYLNEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQGFAR 240
Query: 241 LSAVYGGTYMLNKPECKIEFNDEGKVCGVTSEGETAKCKKVVCDPSYIPDKVRKVGKVFR 300
LSAVYGGTYMLNKP+CK+EF+ EGKVCGVTSEGETAKCKKVVCDPSY+P+KVRK+GKV R
Sbjct: 241 LSAVYGGTYMLNKPDCKVEFDMEGKVCGVTSEGETAKCKKVVCDPSYLPNKVRKIGKVAR 300
Query: 301 AIAIMSHPIPNTADSHSVQIIIPQKQLGRKSDMYVFCCSYSHNVASKGKFIAFVSAQAES 360
AIAIMSHPI +T DSHSVQII+PQKQLGRKSDMYVFCCSY+HNVA KGKFIAFVS +AE+
Sbjct: 301 AIAIMSHPIASTNDSHSVQIILPQKQLGRKSDMYVFCCSYTHNVAPKGKFIAFVSTEAET 360
Query: 361 ENPAAELKPGIDLLGPVDELFIDTYDRFEPTNDPSSDNCFISTSYDATTHFESTVMDVLS 420
+NP +ELKPGIDLLG VDELF D YDR+EP N+PS DNCF+STSYDATTHFE+TV DVL+
Sbjct: 361 DNPQSELKPGIDLLGQVDELFFDIYDRYEPVNEPSLDNCFVSTSYDATTHFETTVTDVLN 420
Query: 421 IYTKITGK 428
+YT ITGK
Sbjct: 421 MYTLITGK 428
>Os03g0277000 Similar to GDP dissociation inhibitor protein OsGDI1
Length = 447
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/428 (78%), Positives = 385/428 (89%)
Query: 1 MDVEYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLNQLWKRFKGEGT 60
MD EYDVIVLGTGLKECI+SGLLSVD LKVLHMDRNDYYGG+STSLNL +LWKRFKG T
Sbjct: 1 MDEEYDVIVLGTGLKECIISGLLSVDGLKVLHMDRNDYYGGESTSLNLTKLWKRFKGNET 60
Query: 61 PPAQIGASRDYNVDMIPKFMMANGTLVRVLIHTGVTKYLSFKAVDGSYVFNKGKIHKVPS 120
P +G S++YNVDM+PKFMMANG LVRVLIHT VTKYL+FKAVDGS+V+N GKIHKVP+
Sbjct: 61 APEHLGVSKEYNVDMVPKFMMANGALVRVLIHTSVTKYLNFKAVDGSFVYNNGKIHKVPA 120
Query: 121 TDMEALKSPLMGLFEKRRAGKFFLFVQDYKENDPSTHKGYDLNKMTTKELISKYGLDDNT 180
TD+EALKS LMGLFEKRRA KFF++VQDY+E+DP +H+G DL+K+TT+E+ISKYGL+D+T
Sbjct: 121 TDVEALKSNLMGLFEKRRARKFFIYVQDYEEDDPKSHEGLDLHKVTTREVISKYGLEDDT 180
Query: 181 IDFIGHAVALHKEDNYLTEPAIDTVKRMKLYAESVGRFQGGSPYIYPLYGLGELPQGFAR 240
+DFIGHA+ALH++DNYL EPAIDTVKRMKLYAES+ RFQGGSPYIYPLYGL ELPQ FAR
Sbjct: 181 VDFIGHALALHRDDNYLDEPAIDTVKRMKLYAESLARFQGGSPYIYPLYGLAELPQAFAR 240
Query: 241 LSAVYGGTYMLNKPECKIEFNDEGKVCGVTSEGETAKCKKVVCDPSYIPDKVRKVGKVFR 300
LSAVYGGTYMLNK ECK+EF++ GK GVTSEGETAKCKKVVCDPSY+PDKV+KVG+V R
Sbjct: 241 LSAVYGGTYMLNKAECKVEFDENGKAYGVTSEGETAKCKKVVCDPSYLPDKVKKVGRVAR 300
Query: 301 AIAIMSHPIPNTADSHSVQIIIPQKQLGRKSDMYVFCCSYSHNVASKGKFIAFVSAQAES 360
AI IM HPIP+T DSHSVQII+P+KQL RKSDMYVFCCSY+HNVA KGKFIAFVS +AE+
Sbjct: 301 AICIMKHPIPDTKDSHSVQIILPKKQLKRKSDMYVFCCSYAHNVAPKGKFIAFVSTEAEA 360
Query: 361 ENPAAELKPGIDLLGPVDELFIDTYDRFEPTNDPSSDNCFISTSYDATTHFESTVMDVLS 420
+ P ELKPGIDLLGPV+E F D YDR+EPTN DNCF++ SYDATTHFE+TV DVL+
Sbjct: 361 DKPEIELKPGIDLLGPVEETFFDIYDRYEPTNTADEDNCFVTNSYDATTHFETTVKDVLA 420
Query: 421 IYTKITGK 428
+Y+KITGK
Sbjct: 421 LYSKITGK 428
>Os01g0269100 Similar to Rab proteins geranylgeranyltransferase component A 2
(Rab escort protein 2) (REP-2) (Choroideraemia-like
protein)
Length = 323
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 118/293 (40%), Gaps = 54/293 (18%)
Query: 5 YDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDS--------------------- 43
+DV++ GTGL E +L+ + VLH+D N +YG
Sbjct: 24 FDVVLCGTGLPESVLAAACAAAGKTVLHVDPNPFYGSLFSSLPLPSLPSFLSPSPSDDPA 83
Query: 44 ----------TSLNLNQLWKRFKGEGTPPAQIGASRDYNVDMI-PKFMMANGTLVRVLIH 92
L + + G P SR + D++ P+ + V +L+
Sbjct: 84 PSPSPSSAAAVDLRRRSPYSEVETSGAVPE---PSRRFTADLVGPRLLYCADEAVDLLLR 140
Query: 93 TGVTKYLSFKAVDG-SYVFNKGKIHKVPSTDMEALKSPLMGLFEKRRAGKFFLFVQDYKE 151
+G + ++ FK+V+G + ++ G ++ VP + K + L EK +FF VQ +
Sbjct: 141 SGGSHHVEFKSVEGGTLLYWDGDLYPVPDSRQAIFKDTTLQLREKNLLFRFFKLVQAHIA 200
Query: 152 NDPSTHKGYDLNKMTTK-----------ELISKYGLDDNTIDFIGHAVALHKEDNYLTEP 200
+ + + + E + + L + +A+A+ D E
Sbjct: 201 ASAAGAAAAGEGEASGRLPDEDLDLPFVEFLKRQNLSPKMRAVVLYAIAMADYDQDGVES 260
Query: 201 A------IDTVKRMKLYAESVGRFQGGS-PYIYPLYGLGELPQGFARLSAVYG 246
+ VK + LY+ S+GRF +IYP+YG GELPQ F R +AV G
Sbjct: 261 CERLLTTREGVKTIALYSSSIGRFANAEGAFIYPMYGHGELPQAFCRCAAVKG 313
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,875,068
Number of extensions: 646345
Number of successful extensions: 1176
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1175
Number of HSP's successfully gapped: 5
Length of query: 446
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 342
Effective length of database: 11,605,545
Effective search space: 3969096390
Effective search space used: 3969096390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)