Os01g0269100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rab proteins geranylgeranyltransferase component A 2 (Rab escort protein 2) (REP-2) (Choroideraemia-like protein).
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Os01g0269100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rab proteins geranylgeranyltransferase component A 2 (Rab escort protein 2) (REP-2) (Choroideraemia-like protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.88 | 0.199 | 10.3 | 0.962 | 0.357 | -0.495 | -0.0778 | 0.995 | 0.18 | 4.05 | 26.7 | 1529 | -- | -- |
| 18.72 | 0.202 | 10.3 | 0.687 | 0.357 | -0.435 | 0.0051 | -- | 0.128 | 4.06 | 26.63 | 1592 | -- | -- |
| 17.9 | 0.197 | 10.3 | 0.962 | 0.356 | -0.496 | -- | 0.993 | 0.18 | 4.06 | 26.7 | 1531 | -- | -- |
| 18.6 | 0.201 | 10.3 | 0.668 | 0.367 | -0.416 | -- | -- | 0.102 | 4.04 | 26.68 | 1530 | -- | -- |
| 23.32 | 0.225 | 10.3 | 0.981 | -- | -0.485 | -- | 1.03 | 0.192 | -- | 26.7 | 1771 | -- | -- |
| 24.85 | 0.234 | 10.4 | 0.509 | 0.368 | -- | -0.133 | -- | -0.0141 | 4.15 | -- | -- | -- | -- |
| 24.9 | 0.234 | 10.4 | 0.51 | 0.368 | -- | -- | -- | -0.0133 | 4.17 | -- | -- | -- | -- |
| 23.64 | 0.227 | 10.4 | 0.604 | -- | -0.301 | -- | -- | 0.0837 | -- | 26.68 | 1530 | -- | -- |
| 29.18 | 0.252 | 10.4 | -- | 0.378 | -0.251 | -- | -- | -0.0194 | 4.03 | 26.8 | 1533 | -- | -- |
| 32.22 | 0.265 | 10.4 | 0.525 | -- | -- | -- | -- | -0.00355 | -- | -- | -- | -- | -- |
| 31.77 | 0.264 | 10.4 | -- | 0.377 | -- | -- | -- | -0.0702 | 4.14 | -- | -- | -- | -- |
| 33.07 | 0.269 | 10.4 | -- | -- | -0.258 | -- | -- | 0.00549 | -- | 26.68 | 1530 | -- | -- |
| 39.49 | 0.293 | 10.4 | -- | -- | -- | -- | -- | -0.0618 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 4 | 17.76 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 19 | 17.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 20 | 17.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 22 | 17.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 23 | 17.93 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 29 | 17.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 45 | 18.09 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 59 | 18.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 9 |
| 66 | 18.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 5 |
| 104 | 18.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 120 | 18.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 124 | 18.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 133 | 18.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 171 | 18.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 200 | 18.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 276 | 18.47 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 285 | 18.48 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 287 | 18.48 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 296 | 18.49 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 300 | 18.49 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 303 | 18.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 13 |
| 322 | 18.51 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 703 | 18.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 723 | 18.71 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 786 | 18.75 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 938 | 18.83 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 964 | 18.84 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 2 |