BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0244300 Os07g0244300|AK068368
(403 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0244300 Protein of unknown function DUF300 family protein 748 0.0
Os06g0726600 Protein of unknown function DUF300 family protein 131 7e-31
Os02g0670000 Protein of unknown function DUF300 family protein 127 2e-29
Os05g0516900 Protein of unknown function DUF300 family protein 124 2e-28
Os07g0506000 Protein of unknown function DUF300 family protein 97 3e-20
>Os07g0244300 Protein of unknown function DUF300 family protein
Length = 403
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/403 (91%), Positives = 367/403 (91%)
Query: 1 MEGWVATXXXXXXXXXXXXXXXXXXXXXXYRHLLHYAEPTHQRFIVRIILMVPVYAVMSF 60
MEGWVAT YRHLLHYAEPTHQRFIVRIILMVPVYAVMSF
Sbjct: 1 MEGWVATVAYTGTALACAAAATVVALRLVYRHLLHYAEPTHQRFIVRIILMVPVYAVMSF 60
Query: 61 LSLVLPGSAIYFNSIREIYDAWVIYNFFSLCLAWVGGPGAVVVSLTGRSLKPSWFMMTCC 120
LSLVLPGSAIYFNSIREIYDAWVIYNFFSLCLAWVGGPGAVVVSLTGRSLKPSWFMMTCC
Sbjct: 61 LSLVLPGSAIYFNSIREIYDAWVIYNFFSLCLAWVGGPGAVVVSLTGRSLKPSWFMMTCC 120
Query: 121 FSAVPLDGRFIRRCKQGCLQFVILKPILVVITFILYAKGKYEDGNFSVNQXXXXXXXXXX 180
FSAVPLDGRFIRRCKQGCLQFVILKPILVVITFILYAKGKYEDGNFSVNQ
Sbjct: 121 FSAVPLDGRFIRRCKQGCLQFVILKPILVVITFILYAKGKYEDGNFSVNQSYLYITIIYT 180
Query: 181 XXXXMALFALALFYVACRDLLQPYNPVPKFIIIKSVVFLTYWQGVLVFLAAKSRFIKNAE 240
MALFALALFYVACRDLLQPYNPVPKFIIIKSVVFLTYWQGVLVFLAAKSRFIKNAE
Sbjct: 181 ISYSMALFALALFYVACRDLLQPYNPVPKFIIIKSVVFLTYWQGVLVFLAAKSRFIKNAE 240
Query: 241 EAAYLQNFVLCVEMLIAAIGHQFAFSYKEYAGSNARPFGGFRGSLFHALKFNDFYHDTVH 300
EAAYLQNFVLCVEMLIAAIGHQFAFSYKEYAGSNARPFGGFRGSLFHALKFNDFYHDTVH
Sbjct: 241 EAAYLQNFVLCVEMLIAAIGHQFAFSYKEYAGSNARPFGGFRGSLFHALKFNDFYHDTVH 300
Query: 301 QFAPTYHEYVLYSNEEEDEPTKYSSASVVSTVQDIQLVEVSVVDSKAPLASVILTHEADK 360
QFAPTYHEYVLYSNEEEDEPTKYSSASVVSTVQDIQLVEVSVVDSKAPLASVILTHEADK
Sbjct: 301 QFAPTYHEYVLYSNEEEDEPTKYSSASVVSTVQDIQLVEVSVVDSKAPLASVILTHEADK 360
Query: 361 TMPSHGMEETVAPSEPYDLSNLVDVELSNYSAEVPAIPDVGKQ 403
TMPSHGMEETVAPSEPYDLSNLVDVELSNYSAEVPAIPDVGKQ
Sbjct: 361 TMPSHGMEETVAPSEPYDLSNLVDVELSNYSAEVPAIPDVGKQ 403
>Os06g0726600 Protein of unknown function DUF300 family protein
Length = 479
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 131/270 (48%), Gaps = 21/270 (7%)
Query: 32 HLLHYAEPTHQRFIVRIILMVPVYAVMSFLSLVLPGSAIYFNSIREIYDAWVIYNFFSLC 91
HL Y P Q+F+V +ILMVP YAV S++SLV P ++ +R+ Y+A+ +Y F
Sbjct: 42 HLSAYKNPEEQKFLVGVILMVPCYAVESYISLVNPSISVDIEILRDGYEAFAMYCFGRYL 101
Query: 92 LAWVGGPGAVVVSL----------------TGRSLKPSWFMMTCCFSAVPLDGRFIRRCK 135
+A +GG + L TG+ F M PL F K
Sbjct: 102 VACLGGEDRTIEFLKREGSSGSDVPLLDHETGQRYVNHPFPMNYMLKPWPLGEWFYLVIK 161
Query: 136 QGCLQFVILKPILVVITFILYAKGKYEDGNFSVNQXXXXXXXXXXXXXXMALFALALFYV 195
G +Q+VI+K I ++ IL + G Y +G F N AL+ L FY
Sbjct: 162 FGLVQYVIIKTICAILAVILESFGVYCEGEFKWNCGYSYTAVVLNFSQSWALYCLVQFYA 221
Query: 196 ACRDLLQPYNPVPKFIIIKSVVFLTYWQGVLVFLAAKSRFIKN--AEEAAY---LQNFVL 250
A +D L P+ KF+ KS+VFLT+WQGV++ L ++ A+E + +Q+F++
Sbjct: 222 AIKDELAHIKPLAKFLTFKSIVFLTWWQGVVIALLYNWGLLRGPIAQELQFKSSIQDFII 281
Query: 251 CVEMLIAAIGHQFAFSYKEYAGSNARPFGG 280
C+EM +A+I H + F K Y R GG
Sbjct: 282 CIEMGVASIAHLYVFPAKPYEMMGDRFIGG 311
>Os02g0670000 Protein of unknown function DUF300 family protein
Length = 475
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 137/271 (50%), Gaps = 23/271 (8%)
Query: 30 YRHLLHYAEPTHQRFIVRIILMVPVYAVMSFLSLVLPGSAIYFNSIREIYDAWVIYNFFS 89
++HL Y P Q+F++ +ILMVP YAV S++SLV P +++Y +R+ Y+A+ +Y F
Sbjct: 41 FQHLSAYNNPEEQKFVLGVILMVPCYAVESYVSLVNPDTSVYCGILRDAYEAFAMYCFGR 100
Query: 90 LCLAWVGGPGAVVVSLT----GRSLKP------------SWFMMTCCFSAVPLDGRFIRR 133
A +GG + L G S +P F + + RF +
Sbjct: 101 YITACLGGEERTIAFLKREGGGDSGEPLLHGASEKGIIHHHFPVNYILKPWRMGVRFYQI 160
Query: 134 CKQGCLQFVILKPILVVITFILYAKGKYEDGNFSVNQXXXXXXXXXXXXXXMALFALALF 193
K G Q+VI+K + ++ IL G Y DG F++ AL+ L +
Sbjct: 161 IKFGIFQYVIIKTLTASLSLILQPFGAYCDGEFNLRCGYPYFAAVLNFSQYWALYCLVEW 220
Query: 194 YVACRDLLQPYNPVPKFIIIKSVVFLTYWQGVLVFLA-----AKSRFIKNAEEAAYLQNF 248
Y A +D L P+ KF+ KS+VFLT+WQG+++ + +S ++ E + +Q+F
Sbjct: 221 YTATKDELAHIKPLAKFLSFKSIVFLTWWQGIMIAIMYSLGLVRSPLAQSLELKSSIQDF 280
Query: 249 VLCVEMLIAAIGHQFAFSYKEYA--GSNARP 277
++C+EM IA++ H + F K Y+ G++ P
Sbjct: 281 IICIEMGIASVVHLYVFPAKPYSLLGNHRSP 311
>Os05g0516900 Protein of unknown function DUF300 family protein
Length = 488
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 127/265 (47%), Gaps = 29/265 (10%)
Query: 30 YRHLLHYAEPTHQRFIVRIILMVPVYAVMSFLSLVLPGSAIYFNSIREIYDAWVIYNFFS 89
+ HL Y +P Q+F++ +ILMVPVYAV SF SL+ A +R+ Y+A+ +Y F
Sbjct: 62 FEHLCAYHQPEEQKFLIGLILMVPVYAVQSFFSLLNSNVAFICELMRDCYEAFAMYCFER 121
Query: 90 LCLAWVGGPGAVVVSLTGR---------------------SLKPSWFMMTCCFSAVPLDG 128
+A +GG + + + GR +WFM L
Sbjct: 122 YLIACLGGEESTIRFMEGRFQFSESSPLLDVDYDYGIVKHPFPLNWFMRNWY-----LGP 176
Query: 129 RFIRRCKQGCLQFVILKPILVVITFILYAKGKYEDGNFSVNQXXXXXXXXXXXXXXMALF 188
F K G +Q++ILKPI ++ + G Y +G F+ AL+
Sbjct: 177 DFYHAVKVGIVQYMILKPICAILAIFMQLIGIYGEGKFAWRYGYPYLAIVLNFSQTWALY 236
Query: 189 ALALFYVACRDLLQPYNPVPKFIIIKSVVFLTYWQGVLV-FLAAKSRFIKNAEE--AAYL 245
L FY A ++ L+P P+ KF+ KS+VFLT+WQG+ V FL + F + + +
Sbjct: 237 CLIQFYTATKEKLEPIKPLSKFLTFKSIVFLTWWQGIAVAFLFSTGLFKGHLAQRFQTRI 296
Query: 246 QNFVLCVEMLIAAIGHQFAFSYKEY 270
Q++++C+EM +AA+ H F K Y
Sbjct: 297 QDYIICLEMGVAAVVHLKVFPAKPY 321
>Os07g0506000 Protein of unknown function DUF300 family protein
Length = 301
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 135/273 (49%), Gaps = 42/273 (15%)
Query: 31 RHLLHYAEPTHQRFIVRIILMVPVYAVMSFLSLV-LPGSAIYF---NSIREIYDAWVIYN 86
+HL ++ P Q+ I+ I+LM P+YA+ SF+ L+ + GS +F ++++E Y+A I
Sbjct: 41 QHLFYWKNPKEQKAILIIVLMAPLYAINSFVGLLDIKGSKTFFTFLDAVKECYEALAIAK 100
Query: 87 FFSLCLAWVG---GPGAVVVSLTGRSLKPSWFMMTCCFSAVPLDGRFIRRCKQGCLQFVI 143
F +L +++ V + GR L S+ + V L+ + ++ K QFV+
Sbjct: 101 FMALMYSYLNISISKNIVPDEIKGRVLHHSFPVSLFLPRNVRLEHKTLKLLKYWTWQFVV 160
Query: 144 LKPILVVITFILYAKGKYEDG---------NFSVNQXXXXXXXXXXXXXXMALFALALFY 194
++PI ++ L G Y NFSV+ MAL+AL +FY
Sbjct: 161 VRPICAILMITLQLLGLYPSWVSWTFTIILNFSVS---------------MALYALVIFY 205
Query: 195 VACRDLLQPYNPVPKFIIIKSVVFLTYWQG-VLVFLAAKSRF--------IKNAEEAAYL 245
L P+ P+ KF+ IK +VF ++WQG L LAA +++ +EA +
Sbjct: 206 HLFAKELAPHKPLAKFLCIKGIVFFSFWQGFALEVLAAVGIIQSHHFWLDVEHIQEA--I 263
Query: 246 QNFVLCVEMLIAAIGHQFAFSYKEYAGSNARPF 278
QN ++ +EM+ ++ Q+A+ Y+G++ F
Sbjct: 264 QNVLVIIEMVFFSVLQQYAYHVAPYSGADRAKF 296
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,137,518
Number of extensions: 464831
Number of successful extensions: 1049
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1037
Number of HSP's successfully gapped: 5
Length of query: 403
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 300
Effective length of database: 11,657,759
Effective search space: 3497327700
Effective search space used: 3497327700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)