BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0212300 Os07g0212300|AK107375
(182 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0212300 Similar to Nudix hydrolase 16, mitochondrial p... 352 6e-98
Os02g0520100 NUDIX hydrolase domain containing protein 127 4e-30
Os11g0531700 NUDIX hydrolase domain containing protein 127 4e-30
Os02g0734300 Similar to Nudix hydrolase 18, mitochondrial p... 120 4e-28
Os03g0810300 Conserved hypothetical protein 119 9e-28
Os06g0255400 Similar to Nudix hydrolase 18, mitochondrial p... 101 3e-22
Os04g0399300 Similar to Nudix hydrolase 13, mitochondrial p... 101 3e-22
>Os07g0212300 Similar to Nudix hydrolase 16, mitochondrial precursor (EC 3.6.1.-)
(AtNUDT16)
Length = 182
Score = 352 bits (904), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 170/182 (93%), Positives = 170/182 (93%)
Query: 1 MCDLVARTGRHQQRYEHGRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQSGSGLL 60
MCDLVARTGRHQQRYEHGRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQSGSGLL
Sbjct: 1 MCDLVARTGRHQQRYEHGRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQSGSGLL 60
Query: 61 FPKGGWENDETVXXXXXXXXXXXXGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVFA 120
FPKGGWENDETV GVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVFA
Sbjct: 61 FPKGGWENDETVEEAAAREAIEEAGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVFA 120
Query: 121 LRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREALTTGFTTWHENWSNGDDHVDPS 180
LRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREALTTGFTTWHENWSNGDDHVDPS
Sbjct: 121 LRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREALTTGFTTWHENWSNGDDHVDPS 180
Query: 181 SR 182
SR
Sbjct: 181 SR 182
>Os02g0520100 NUDIX hydrolase domain containing protein
Length = 204
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 4 LVARTGRHQQRYEHGRRLVAGCIPFRYKDNNDETSDDGH-KKLVEVLMINSQSGSGLLFP 62
+VARTGR +QRY++ RLVAGC+P+R K + G VEVLM+++ + + ++FP
Sbjct: 7 VVARTGRLRQRYDNEYRLVAGCVPYRVKKDEANPRILGDVPGQVEVLMVSTPNRADMVFP 66
Query: 63 KGGWENDETVXXXXXXXXXXXXGVRGDLVQL-LGFYDFKSKTHQDKFCPEGMCRAAVFAL 121
KGGWE+DE V GV+G + + LG + FKSK+ Q+ P G C+ +FA+
Sbjct: 67 KGGWEDDEEVYEAASREAMEEAGVKGIVNRTTLGHWVFKSKSSQNSSSPRGACKGYIFAM 126
Query: 122 RVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREALTT 161
V EEL SWPEQ+T R W++ EA + RY W+REALT
Sbjct: 127 EVTEELESWPEQATHGRRWVSPGEAYQLCRYEWMREALTA 166
>Os11g0531700 NUDIX hydrolase domain containing protein
Length = 246
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 6 ARTGRHQQRYEHGRRLVAGCIPFRYKDNNDETS----DDGHK-KLVEVLMINSQSGSGLL 60
AR GR +QRYE RLV+GCIP+ K++ + +S DD H + ++VLMI++ S L+
Sbjct: 43 ARQGRLRQRYEGCYRLVSGCIPYMIKEDGENSSSSLQDDDHVLERLQVLMISTPKRSDLI 102
Query: 61 FPKGGWENDETVXXXXXXXXXXXXGVRGDLVQL-LGFYDFKSKTHQDKFCPEGMCRAAVF 119
FPKGGWE+DE++ GV+G L LG + FKSK+ Q+ +G C+ +F
Sbjct: 103 FPKGGWEDDESIGEAACREAFEEAGVKGVLSGTPLGEWIFKSKSKQNSCGLQGACKGYMF 162
Query: 120 ALRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREAL 159
AL+V E L SWPEQ+T R W+ + EA RY W+REAL
Sbjct: 163 ALQVTELLESWPEQTTHGRRWVPVEEAYGLCRYDWMREAL 202
>Os02g0734300 Similar to Nudix hydrolase 18, mitochondrial precursor (EC 3.6.1.-)
(AtNUDT18)
Length = 160
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 93/160 (58%), Gaps = 17/160 (10%)
Query: 1 MCDLVARTGRHQQRY-EHGRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQSGSGL 59
M LVAR GR QRY G R+V GCIP+R + + +EVL+I SQ G G+
Sbjct: 1 MAVLVARQGRELQRYTSAGGRIVVGCIPYRVRSGGE----------MEVLVITSQKGHGM 50
Query: 60 LFPKGGWENDETVXXXXXXXXXXXXGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVF 119
+FPKGGWE DE++ GVRGD LG + +KS+ + + EG +F
Sbjct: 51 MFPKGGWELDESMDEAARREALEEAGVRGDTETSLGCWYYKSRRYDTTY--EGF----MF 104
Query: 120 ALRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREAL 159
LRV +EL WPE S+RKRTW T+ +A++ ++ W+REAL
Sbjct: 105 PLRVTDELLQWPEMSSRKRTWATVQQAMDGCQHGWMREAL 144
>Os03g0810300 Conserved hypothetical protein
Length = 75
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 55/63 (87%), Positives = 58/63 (92%)
Query: 1 MCDLVARTGRHQQRYEHGRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQSGSGLL 60
MCDLVARTGRHQQRYE GRRLVAGCIPFRY+ +NDETSDD KK+VEVLMINSQSG GLL
Sbjct: 1 MCDLVARTGRHQQRYEDGRRLVAGCIPFRYRTSNDETSDDEPKKIVEVLMINSQSGPGLL 60
Query: 61 FPK 63
FPK
Sbjct: 61 FPK 63
>Os06g0255400 Similar to Nudix hydrolase 18, mitochondrial precursor (EC 3.6.1.-)
(AtNUDT18)
Length = 168
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 92/163 (56%), Gaps = 22/163 (13%)
Query: 4 LVARTGRHQQRYEH--GRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQ-----SG 56
+VAR GR QRY G R+V GCIP+R + G VEVL+I+SQ +G
Sbjct: 5 MVARQGRELQRYSDNTGGRMVVGCIPYRVR---------GDGGGVEVLVISSQKKGAAAG 55
Query: 57 SGLLFPKGGWENDETVXXXXXXXXXXXXGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRA 116
++FPKGGWE DE+V GV G++ LG + ++S+ + + EG
Sbjct: 56 DVVMFPKGGWELDESVDEAARREALEEAGVLGEIGASLGRWCYRSRRYDATY--EGF--- 110
Query: 117 AVFALRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREAL 159
VF LRV +EL WPE + R+R+W++ +A++R + W+REAL
Sbjct: 111 -VFPLRVTDELDRWPEMAARRRSWVSPQQAMDRCPHWWMREAL 152
>Os04g0399300 Similar to Nudix hydrolase 13, mitochondrial precursor (EC 3.6.1.-)
(AtNUDT13)
Length = 222
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 90/163 (55%), Gaps = 12/163 (7%)
Query: 7 RTGRHQQRYEHGRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQSGSGLLFPKGGW 66
R GR +QRY+ RLVAGC+P+R G +EVLM+++ + + L+FPKGGW
Sbjct: 20 RKGRLRQRYDGEYRLVAGCVPYRVV----AAGGGGGGGELEVLMVSTPNRADLVFPKGGW 75
Query: 67 ENDETVXXXXXXXXXXXXGVRGDLVQL-LGFYDFKSKTHQDKFCPE-------GMCRAAV 118
E+DE V GV+G++ ++ LG + +SK+ Q E G C+ +
Sbjct: 76 EDDEDVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGYM 135
Query: 119 FALRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREALTT 161
F L V EE+ WPEQ+T R WL ++A SRY W+REAL
Sbjct: 136 FELEVTEEMDRWPEQATHGRRWLPPADAFRLSRYGWMREALAA 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,537,132
Number of extensions: 245965
Number of successful extensions: 436
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 7
Length of query: 182
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 87
Effective length of database: 12,075,471
Effective search space: 1050565977
Effective search space used: 1050565977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)