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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0212300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nudix hydrolase 16, mitochondrial precursor (EC 3.6.1.-) (AtNUDT16).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.45 (0.0373) R2 : 0.495
β1 : -1.44 (0.184) R2dD : 0.148 R2D : -0.138
β2 : 1.51 (0.0826) R2dC : 0.372 R2C : 0.378
β3 : 1.37 (0.148) R2dE : 0.236 R2E : -0.0647
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.545 (0.0957) R2dN8 : 0.0807 R2N8 : -0.0747
σ : 0.65
deviance : 194.73
__
_____
C
peak time of C : 0.0697
E
wheather : temperature
threshold : 18.39
memory length : 24333
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.55 0.645 5.49 -1.73 1.57 1.27 -1.15 -3.94 -0.391 0.146 25.6 5934 -- --
189.7 0.641 5.45 -1.47 1.5 1.36 -1.07 -- -0.539 0.08 18.3 24229 -- --
194.24 0.649 5.49 -1.64 1.56 1.26 -- -3.82 -0.372 0.118 25.53 5890 -- --
194.73 0.65 5.45 -1.44 1.51 1.37 -- -- -0.545 0.0697 18.39 24333 -- --
315.86 0.828 5.43 -1.35 -- 1.61 -- -3.5 -0.321 -- 24.3 2395 -- --
227.09 0.706 5.32 -0.256 1.56 -- -0.995 -- 0.00585 0.123 -- -- -- --
231.38 0.712 5.32 -0.217 1.56 -- -- -- 0.0104 0.125 -- -- -- --
301.24 0.808 5.34 -0.644 -- 1.62 -- -- -0.235 -- 23.42 993 -- --
207.45 0.671 5.35 -- 1.59 0.786 -- -- -0.153 23.9 26.43 8963 -- --
384.71 0.917 5.29 -0.167 -- -- -- -- 0.0333 -- -- -- -- --
232.62 0.713 5.32 -- 1.56 -- -- -- 0.0346 0.117 -- -- -- --
311.21 0.822 5.32 -- -- 1.5 -- -- -0.117 -- 23.74 989 -- --
385.44 0.916 5.29 -- -- -- -- -- 0.0518 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.22 precipitation 0.1 43200 < th dose independent rect. 9 1
2 183.22 precipitation 0.1 43200 < th dose dependent rect. 9 1
3 183.34 precipitation 0.1 43200 > th dose independent rect. 8 2
4 183.34 precipitation 0.1 43200 > th dose dependent rect. 8 2
9 184.93 precipitation 0.1 43200 < th dose independent rect. 4 1
10 184.93 precipitation 0.1 43200 < th dose dependent rect. 4 1
11 185.21 radiation 1.0 43200 > th dose independent rect. 9 1
12 185.24 precipitation 0.1 43200 > th dose dependent rect. 4 1
13 185.33 radiation 1.0 43200 < th dose independent rect. 9 1
14 185.58 precipitation 0.1 43200 > th dose independent rect. 4 1
17 185.94 temperature 25.0 1440 > th dose dependent rect. 14 8
23 186.17 temperature 25.0 1440 > th dose dependent rect. 14 15
29 186.24 temperature 25.0 1440 > th dose dependent rect. 16 6
41 186.39 temperature 25.0 1440 > th dose dependent rect. 17 3
58 186.55 temperature 20.0 43200 < th dose independent rect. 5 1
60 186.59 temperature 25.0 1440 > th dose dependent sin 15 NA
65 186.63 temperature 20.0 43200 > th dose independent rect. 5 1
74 186.68 radiation 1.0 43200 < th dose independent rect. 8 6
77 186.71 radiation 1.0 43200 < th dose independent rect. 9 3
82 186.74 radiation 1.0 43200 > th dose independent rect. 8 6
87 186.77 radiation 1.0 43200 > th dose independent rect. 9 3
93 186.81 temperature 20.0 43200 < th dose independent rect. 2 1
102 186.85 radiation 1.0 43200 < th dose dependent rect. 6 9
104 186.85 temperature 25.0 14400 > th dose dependent rect. 11 19
117 186.89 temperature 20.0 43200 > th dose independent rect. 2 1
119 186.90 temperature 20.0 43200 > th dose independent rect. 21 1
125 186.91 temperature 20.0 43200 > th dose independent rect. 7 1
127 186.91 temperature 20.0 43200 < th dose independent rect. 2 4
133 186.93 temperature 20.0 43200 < th dose independent rect. 21 2
134 186.94 temperature 20.0 43200 < th dose independent rect. 7 1
148 186.98 temperature 20.0 43200 > th dose independent rect. 2 4
150 186.98 temperature 25.0 14400 > th dose dependent rect. 17 1
181 187.05 temperature 25.0 14400 > th dose dependent sin 16 NA
183 187.05 temperature 25.0 14400 > th dose dependent rect. 11 9
201 187.08 radiation 1.0 43200 < th dose dependent rect. 6 1
208 187.10 temperature 30.0 43200 < th dose independent rect. 15 1
215 187.11 temperature 25.0 14400 > th dose dependent rect. 11 2
216 187.11 radiation 1.0 43200 < th dose dependent rect. 8 6
227 187.12 temperature 25.0 14400 > th dose dependent rect. 14 6
261 187.18 temperature 25.0 1440 > th dose dependent rect. 14 1
274 187.19 temperature 25.0 14400 > th dose dependent rect. 11 5
312 187.24 humidity 90.0 43200 > th dose dependent rect. 23 1
327 187.27 temperature 30.0 43200 > th dose independent rect. 14 2
393 187.36 temperature 25.0 14400 > th dose dependent rect. 22 21
429 187.40 temperature 25.0 14400 > th dose independent rect. 24 12
442 187.42 radiation 1.0 43200 < th dose dependent rect. 9 4
455 187.44 temperature 25.0 14400 > th dose dependent no NA NA
466 187.45 temperature 25.0 14400 > th dose dependent rect. 5 23
474 187.46 temperature 25.0 14400 > th dose dependent rect. 1 23
478 187.46 temperature 25.0 14400 > th dose dependent rect. 17 23
511 187.50 temperature 25.0 14400 < th dose independent rect. 24 12
551 187.53 temperature 25.0 14400 > th dose dependent rect. 14 23
632 187.62 radiation 1.0 43200 < th dose dependent rect. 6 4
716 187.74 wind 7.0 43200 > th dose independent rect. 11 1
717 187.74 wind 7.0 43200 < th dose independent rect. 11 1
741 187.78 temperature 20.0 43200 > th dose dependent rect. 2 1
760 187.82 temperature 25.0 43200 > th dose independent rect. 10 1
762 187.82 temperature 30.0 14400 < th dose independent rect. 12 4
773 187.83 humidity 90.0 43200 > th dose independent rect. 13 16
796 187.87 temperature 20.0 43200 > th dose independent rect. 18 1
812 187.89 temperature 30.0 14400 < th dose independent rect. 12 6
824 187.91 temperature 20.0 43200 < th dose independent sin 10 NA
835 187.93 temperature 25.0 14400 > th dose independent sin 7 NA
838 187.93 temperature 30.0 14400 < th dose independent rect. 14 13
847 187.94 temperature 30.0 14400 < th dose independent rect. 14 11
860 187.95 temperature 30.0 14400 < th dose independent rect. 14 8
902 187.99 temperature 25.0 43200 < th dose independent rect. 10 1
905 187.99 temperature 30.0 14400 < th dose independent rect. 12 13
913 188.00 temperature 20.0 43200 > th dose independent sin 10 NA
918 188.00 temperature 30.0 14400 < th dose independent rect. 12 9
925 188.00 temperature 30.0 14400 < th dose independent rect. 12 20
928 188.01 temperature 20.0 43200 < th dose independent rect. 18 1
953 188.03 humidity 90.0 43200 > th dose dependent rect. 14 15
973 188.05 humidity 90.0 43200 > th dose dependent rect. 14 13