BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0212300 Os07g0212300|AK107375
(182 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G12600.1 | chr3:4004809-4005995 FORWARD LENGTH=181 217 3e-57
AT3G26690.1 | chr3:9804418-9805398 REVERSE LENGTH=203 142 1e-34
AT1G12880.1 | chr1:4390036-4391046 FORWARD LENGTH=204 133 5e-32
AT2G01670.1 | chr2:296889-297818 REVERSE LENGTH=183 125 1e-29
AT1G14860.1 | chr1:5124993-5125805 FORWARD LENGTH=177 124 2e-29
AT1G18300.1 | chr1:6299841-6300799 FORWARD LENGTH=208 120 5e-28
AT1G73540.1 | chr1:27645880-27646571 REVERSE LENGTH=199 108 1e-24
>AT3G12600.1 | chr3:4004809-4005995 FORWARD LENGTH=181
Length = 180
Score = 217 bits (552), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/168 (61%), Positives = 126/168 (75%), Gaps = 1/168 (0%)
Query: 1 MCDLVARTGRHQQRYEHGRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQSGSGLL 60
MCDLVARTGR QQRYE G RLVAGCIPFRY N+D+ + K+++VLMI+S SG GLL
Sbjct: 1 MCDLVARTGRLQQRYEDGSRLVAGCIPFRYV-NSDKDGNSESGKVIQVLMISSSSGPGLL 59
Query: 61 FPKGGWENDETVXXXXXXXXXXXXGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVFA 120
FPKGGWENDETV GVRG L+ LG Y+FKSK+HQD+F PEG+C+AA++A
Sbjct: 60 FPKGGWENDETVREAAAREAVEEAGVRGILMDFLGNYEFKSKSHQDEFSPEGLCKAAMYA 119
Query: 121 LRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREALTTGFTTWHE 168
L VKEELA+WPE TR R WLT+ EAVE R+PW+++AL GF WH+
Sbjct: 120 LYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDALVEGFCKWHK 167
>AT3G26690.1 | chr3:9804418-9805398 REVERSE LENGTH=203
Length = 202
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 110/186 (59%), Gaps = 6/186 (3%)
Query: 1 MCDLVARTGRHQQRYEHGRRLVAGCIPFRY--KDNNDETSDDGHKKLVEVLMINSQSGSG 58
M +L ARTGR QRY++ RLV+GCIP+R + D TS D KL +VLMI+S +
Sbjct: 1 MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDFENKL-QVLMISSPNRHD 59
Query: 59 LLFPKGGWENDETVXXXXXXXXXXXXGVRGDLVQ-LLGFYDFKSKTH--QDKFCPEGMCR 115
L+FPKGGWE+DETV GV+G L + LG ++F+SK+ + C G C+
Sbjct: 60 LVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCK 119
Query: 116 AAVFALRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREALTTGFTTWHENWSNGDD 175
+FAL VKEELA WPEQ R+R WL + EA+E RY W++ AL E S +D
Sbjct: 120 GYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEFLRVMAEEGSTKED 179
Query: 176 HVDPSS 181
+ SS
Sbjct: 180 SLAISS 185
>AT1G12880.1 | chr1:4390036-4391046 FORWARD LENGTH=204
Length = 203
Score = 133 bits (335), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 102/163 (62%), Gaps = 5/163 (3%)
Query: 1 MCDLVARTGRHQQRYEHGRRLVAGCIPFRYKDNNDETSDDGHKKLV---EVLMINSQSGS 57
M L +RTGR +QRY++ RLV+GCIP+R DET +D V EVLM++S +
Sbjct: 1 MSVLSSRTGRDRQRYDNNFRLVSGCIPYRLM-KADETEEDSGVDFVNKLEVLMVSSPNRH 59
Query: 58 GLLFPKGGWENDETVXXXXXXXXXXXXGVRGDLVQL-LGFYDFKSKTHQDKFCPEGMCRA 116
L+FPKGGWE+DETV GV+G L +L LG ++F+SK+ + G C+
Sbjct: 60 DLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKG 119
Query: 117 AVFALRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREAL 159
+FAL+V EEL WPE+ R+R WLT+ EA+E RY W++ AL
Sbjct: 120 YMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRAL 162
>AT2G01670.1 | chr2:296889-297818 REVERSE LENGTH=183
Length = 182
Score = 125 bits (314), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 97/160 (60%), Gaps = 12/160 (7%)
Query: 1 MCDLVARTGRHQQRYEHGRRLVAGCIPFRYKDNND-ETSDDGHKKLVEVLMINSQSGSGL 59
M L +RTGR QRY GRR V GC+P+R+K +ND + SD+ VEVL+I+SQ G L
Sbjct: 6 MVCLASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDGKISDE-----VEVLVISSQKGHAL 60
Query: 60 LFPKGGWENDETVXXXXXXXXXXXXGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVF 119
+FPKGGWE DE+V GV G++ LG +DF SK+ + EG+ +F
Sbjct: 61 MFPKGGWELDESVEEAASRECLEEAGVLGNVEHQLGKWDFLSKSRGTYY--EGL----MF 114
Query: 120 ALRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREAL 159
+ V E+L WPEQ R+R W+ ++EA E R W++EAL
Sbjct: 115 PMLVTEQLELWPEQHVRQRIWMNVTEAREACRDWWMKEAL 154
>AT1G14860.1 | chr1:5124993-5125805 FORWARD LENGTH=177
Length = 176
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 10/159 (6%)
Query: 1 MCDLVARTGRHQQRYEHGRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQSGSGLL 60
M LV+RTGR QRY GRR V GCIP+R K ++D T D EVL+I+SQ G L+
Sbjct: 1 MVCLVSRTGRQSQRYNKGRRQVVGCIPYRLKISSDGTISDEF----EVLVISSQKGHALM 56
Query: 61 FPKGGWENDETVXXXXXXXXXXXXGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVFA 120
FPKGGWE DE+V GV G++ + LG +DF SK+ + EG +F
Sbjct: 57 FPKGGWELDESVEEAASRESLEEAGVVGNVERQLGKWDFLSKSKGTFY--EGF----MFP 110
Query: 121 LRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREAL 159
+ VKEEL WPEQ R+R W+ + EA + R W++EAL
Sbjct: 111 MLVKEELELWPEQHLRQRIWMKVDEARDACRDWWMKEAL 149
>AT1G18300.1 | chr1:6299841-6300799 FORWARD LENGTH=208
Length = 207
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 95/160 (59%), Gaps = 10/160 (6%)
Query: 1 MCDLVARTGRHQQRYEH-GRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQSGSGL 59
+ LV+RTGR QRY+H G R V GC+P+RYK + + ++++VL++++Q G G+
Sbjct: 40 VVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYKK---QEVNGVETQVIQVLLVSAQKGKGM 96
Query: 60 LFPKGGWENDETVXXXXXXXXXXXXGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVF 119
LFPKGGWE DE++ GV G+L + LG + +KSK H +G +F
Sbjct: 97 LFPKGGWETDESMEEAALRETIEEAGVTGELEEKLGKWQYKSKRH--SIIHDGY----MF 150
Query: 120 ALRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREAL 159
AL V +E WPE R+R W++L EA E + W+REAL
Sbjct: 151 ALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREAL 190
>AT1G73540.1 | chr1:27645880-27646571 REVERSE LENGTH=199
Length = 198
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 16/161 (9%)
Query: 1 MCDLVARTGRHQQRYE-HGRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQS-GSG 58
+ LV+RTGR QRY G R V GC+P+RYK + +EVL+I++Q G G
Sbjct: 41 VVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYKKHGGGE--------IEVLLISAQKKGKG 92
Query: 59 LLFPKGGWENDETVXXXXXXXXXXXXGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAV 118
+L PKGGWE DE++ GV G L + LG + +KSK H + +
Sbjct: 93 MLLPKGGWEIDESIEEAALRETIEEAGVTGQLEESLGKWQYKSKRHT------MIHDGHM 146
Query: 119 FALRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREAL 159
F L V ++ WPE R+R W++LSEA+E + W+REAL
Sbjct: 147 FPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREAL 187
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,142,554
Number of extensions: 154268
Number of successful extensions: 321
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 7
Length of query: 182
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 90
Effective length of database: 8,584,297
Effective search space: 772586730
Effective search space used: 772586730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)