Os02g0734300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nudix hydrolase 18, mitochondrial precursor (EC 3.6.1.-) (AtNUDT18).
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Os02g0734300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nudix hydrolase 18, mitochondrial precursor (EC 3.6.1.-) (AtNUDT18).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.11 | 0.373 | 11.4 | 1.41 | 1.18 | -0.807 | -0.46 | 1.55 | 0.324 | 2.93 | 26.3 | 775 | -- | -- |
| 67.16 | 0.382 | 11.4 | 1.16 | 1.24 | -0.748 | 0.00917 | -- | 0.256 | 2.97 | 26.6 | 877 | -- | -- |
| 63.83 | 0.372 | 11.4 | 1.41 | 1.18 | -0.81 | -- | 1.52 | 0.325 | 2.91 | 26.3 | 775 | -- | -- |
| 66.13 | 0.379 | 11.4 | 1.05 | 1.22 | -0.731 | -- | -- | 0.186 | 3.11 | 26.4 | 841 | -- | -- |
| 110.57 | 0.49 | 11.3 | 1.55 | -- | -1.02 | -- | 1.85 | 0.452 | -- | 26.22 | 370 | -- | -- |
| 79.85 | 0.419 | 11.5 | 0.801 | 1.25 | -- | -0.549 | -- | 0.000514 | 4.06 | -- | -- | -- | -- |
| 80.71 | 0.421 | 11.5 | 0.807 | 1.25 | -- | -- | -- | 0.00358 | 4.05 | -- | -- | -- | -- |
| 107.44 | 0.483 | 11.4 | 1.09 | -- | -0.898 | -- | -- | 0.318 | -- | 25.9 | 312 | -- | -- |
| 91.84 | 0.446 | 11.4 | -- | 1.29 | -0.49 | -- | -- | 0.0285 | 3.48 | 26.7 | 871 | -- | -- |
| 165.65 | 0.601 | 11.5 | 0.858 | -- | -- | -- | -- | 0.0369 | -- | -- | -- | -- | -- |
| 97.88 | 0.463 | 11.5 | -- | 1.26 | -- | -- | -- | -0.0863 | 4.04 | -- | -- | -- | -- |
| 137.92 | 0.547 | 11.4 | -- | -- | -0.772 | -- | -- | 0.182 | -- | 25.8 | 278 | -- | -- |
| 185.07 | 0.635 | 11.5 | -- | -- | -- | -- | -- | -0.0583 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 2 | 56.20 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 3 |
| 3 | 56.25 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |
| 4 | 56.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 16 | 15 |
| 9 | 56.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 15 | 57.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 28 | 57.25 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 1 |
| 39 | 57.85 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 8 |
| 58 | 58.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 130 | 59.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 8 |
| 158 | 59.53 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 12 |
| 203 | 59.99 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 224 | 60.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 8 |
| 225 | 60.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 245 | 60.24 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 250 | 60.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 12 | 21 |
| 300 | 60.53 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 351 | 60.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 360 | 60.95 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 398 | 61.17 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 473 | 61.67 | temperature | 25 | 10 | < th | dose dependent | sin | 15 | NA |
| 486 | 61.71 | temperature | 30 | 90 | < th | dose dependent | sin | 14 | NA |
| 492 | 61.74 | temperature | 20 | 30 | > th | dose dependent | sin | 13 | NA |
| 495 | 61.76 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 18 |
| 502 | 61.81 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 579 | 62.05 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 8 |
| 591 | 62.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 596 | 62.11 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 16 |
| 603 | 62.15 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 647 | 62.26 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 14 |
| 709 | 62.49 | temperature | 25 | 720 | > th | dose dependent | sin | 16 | NA |
| 716 | 62.52 | temperature | 10 | 30 | > th | dose dependent | sin | 13 | NA |
| 928 | 63.20 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |