BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0734300 Os02g0734300|AK059780
(160 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0734300 Similar to Nudix hydrolase 18, mitochondrial p... 307 2e-84
Os06g0255400 Similar to Nudix hydrolase 18, mitochondrial p... 191 2e-49
Os07g0212300 Similar to Nudix hydrolase 16, mitochondrial p... 119 8e-28
Os11g0531700 NUDIX hydrolase domain containing protein 106 6e-24
Os02g0520100 NUDIX hydrolase domain containing protein 99 2e-21
Os04g0399300 Similar to Nudix hydrolase 13, mitochondrial p... 87 6e-18
>Os02g0734300 Similar to Nudix hydrolase 18, mitochondrial precursor (EC 3.6.1.-)
(AtNUDT18)
Length = 160
Score = 307 bits (786), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 149/160 (93%), Positives = 149/160 (93%)
Query: 1 MAVLVARQGRELQRYTSAGGRIVVGCIPYRVRSGGEMEVLVITSQKGHGMMFPKGGWELD 60
MAVLVARQGRELQRYTSAGGRIVVGCIPYRVRSGGEMEVLVITSQKGHGMMFPKGGWELD
Sbjct: 1 MAVLVARQGRELQRYTSAGGRIVVGCIPYRVRSGGEMEVLVITSQKGHGMMFPKGGWELD 60
Query: 61 ESMDXXXXXXXXXXXGVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQWPEMSS 120
ESMD GVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQWPEMSS
Sbjct: 61 ESMDEAARREALEEAGVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQWPEMSS 120
Query: 121 RKRTWATVQQAMDGCQHGWMREALERLVSRHATNKLQSAL 160
RKRTWATVQQAMDGCQHGWMREALERLVSRHATNKLQSAL
Sbjct: 121 RKRTWATVQQAMDGCQHGWMREALERLVSRHATNKLQSAL 160
>Os06g0255400 Similar to Nudix hydrolase 18, mitochondrial precursor (EC 3.6.1.-)
(AtNUDT18)
Length = 168
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/155 (63%), Positives = 116/155 (74%), Gaps = 7/155 (4%)
Query: 2 AVLVARQGRELQRYT-SAGGRIVVGCIPYRVR-SGGEMEVLVITSQK-----GHGMMFPK 54
AV+VARQGRELQRY+ + GGR+VVGCIPYRVR GG +EVLVI+SQK G +MFPK
Sbjct: 3 AVMVARQGRELQRYSDNTGGRMVVGCIPYRVRGDGGGVEVLVISSQKKGAAAGDVVMFPK 62
Query: 55 GGWELDESMDXXXXXXXXXXXGVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQ 114
GGWELDES+D GV G+ SLG W Y+SRRYD TYEGF+FPLRVTDEL +
Sbjct: 63 GGWELDESVDEAARREALEEAGVLGEIGASLGRWCYRSRRYDATYEGFVFPLRVTDELDR 122
Query: 115 WPEMSSRKRTWATVQQAMDGCQHGWMREALERLVS 149
WPEM++R+R+W + QQAMD C H WMREAL+R
Sbjct: 123 WPEMAARRRSWVSPQQAMDRCPHWWMREALQRFAD 157
>Os07g0212300 Similar to Nudix hydrolase 16, mitochondrial precursor (EC 3.6.1.-)
(AtNUDT16)
Length = 182
Score = 119 bits (298), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 94/160 (58%), Gaps = 17/160 (10%)
Query: 1 MAVLVARQGRELQRYTSAGGRIVVGCIPYRVRSGGE----------MEVLVITSQKGHGM 50
M LVAR GR QRY G R+V GCIP+R + + +EVL+I SQ G G+
Sbjct: 1 MCDLVARTGRHQQRY-EHGRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQSGSGL 59
Query: 51 MFPKGGWELDESMDXXXXXXXXXXXGVRGDTETSLGCWYYKSRRYDTTY--EGF----MF 104
+FPKGGWE DE+++ GVRGD LG + +KS+ + + EG +F
Sbjct: 60 LFPKGGWENDETVEEAAAREAIEEAGVRGDLVQLLGFYDFKSKTHQDKFCPEGMCRAAVF 119
Query: 105 PLRVTDELLQWPEMSSRKRTWATVQQAMDGCQHGWMREAL 144
LRV +EL WPE S+RKRTW T+ +A++ ++ W+REAL
Sbjct: 120 ALRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWVREAL 159
>Os11g0531700 NUDIX hydrolase domain containing protein
Length = 246
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 91/169 (53%), Gaps = 23/169 (13%)
Query: 1 MAVLVARQGRELQRYTSAGGRIVVGCIPYRVRSGGE---------------MEVLVITSQ 45
M + ARQGR QRY R+V GCIPY ++ GE ++VL+I++
Sbjct: 38 MNMACARQGRLRQRYEGCY-RLVSGCIPYMIKEDGENSSSSLQDDDHVLERLQVLMISTP 96
Query: 46 KGHGMMFPKGGWELDESMDXXXXXXXXXXXGVRGDTE-TSLGCWYYKSRRYDTTY----- 99
K ++FPKGGWE DES+ GV+G T LG W +KS+ +
Sbjct: 97 KRSDLIFPKGGWEDDESIGEAACREAFEEAGVKGVLSGTPLGEWIFKSKSKQNSCGLQGA 156
Query: 100 -EGFMFPLRVTDELLQWPEMSSRKRTWATVQQAMDGCQHGWMREALERL 147
+G+MF L+VT+ L WPE ++ R W V++A C++ WMREAL++L
Sbjct: 157 CKGYMFALQVTELLESWPEQTTHGRRWVPVEEAYGLCRYDWMREALDKL 205
>Os02g0520100 NUDIX hydrolase domain containing protein
Length = 204
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 90/165 (54%), Gaps = 19/165 (11%)
Query: 4 LVARQGRELQRYTSAGGRIVVGCIPYRVRSG-----------GEMEVLVITSQKGHGMMF 52
+VAR GR QRY + R+V GC+PYRV+ G++EVL++++ M+F
Sbjct: 7 VVARTGRLRQRYDNEY-RLVAGCVPYRVKKDEANPRILGDVPGQVEVLMVSTPNRADMVF 65
Query: 53 PKGGWELDESMDXXXXXXXXXXXGVRGDTE-TSLGCWYYKSRRYDTTY------EGFMFP 105
PKGGWE DE + GV+G T+LG W +KS+ + +G++F
Sbjct: 66 PKGGWEDDEEVYEAASREAMEEAGVKGIVNRTTLGHWVFKSKSSQNSSSPRGACKGYIFA 125
Query: 106 LRVTDELLQWPEMSSRKRTWATVQQAMDGCQHGWMREALERLVSR 150
+ VT+EL WPE ++ R W + +A C++ WMREAL L+ R
Sbjct: 126 MEVTEELESWPEQATHGRRWVSPGEAYQLCRYEWMREALTALLER 170
>Os04g0399300 Similar to Nudix hydrolase 13, mitochondrial precursor (EC 3.6.1.-)
(AtNUDT13)
Length = 222
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 82/158 (51%), Gaps = 21/158 (13%)
Query: 7 RQGRELQRYTSAGGRIVVGCIPYRVRSGG------EMEVLVITSQKGHGMMFPKGGWELD 60
R+GR QRY R+V GC+PYRV + G E+EVL++++ ++FPKGGWE D
Sbjct: 20 RKGRLRQRYDGEY-RLVAGCVPYRVVAAGGGGGGGELEVLMVSTPNRADLVFPKGGWEDD 78
Query: 61 ESMDXXXXXXXXXXXGVRGD-TETSLGCWYYKSRRYDT-------------TYEGFMFPL 106
E + GV+G+ SLG W +S+ + +G+MF L
Sbjct: 79 EDVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGYMFEL 138
Query: 107 RVTDELLQWPEMSSRKRTWATVQQAMDGCQHGWMREAL 144
VT+E+ +WPE ++ R W A ++GWMREAL
Sbjct: 139 EVTEEMDRWPEQATHGRRWLPPADAFRLSRYGWMREAL 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,209,780
Number of extensions: 192616
Number of successful extensions: 395
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 6
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)