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Os04g0399300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nudix hydrolase 13, mitochondrial precursor (EC 3.6.1.-) (AtNUDT13).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.42 (0.0432) R2 : 0.793
β1 : 4.96 (0.165) R2dD : 0.477 R2D : 0.18
β2 : 2.4 (0.108) R2dC : 0.227 R2C : 0.182
β3 : -1.24 (0.0991) R2dE : 0.0755 R2E : -0.0659
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 2.27 (0.346) R2dD*E : 0.0223 R2D*E : -0.11
γ1 : 1.98 (0.0927) R2dN8 : 0.29 R2N8 : 0.0697
σ : 0.796
deviance : 292.07
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C
peak time of C : 3.72
E
wheather : temperature
threshold : 20.2
memory length : 109
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.5
open length of G : 20.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
292.22 0.803 9.42 4.95 2.4 -1.24 -0.0297 2.25 1.98 3.73 20.17 101 21.6 20.1
316.26 0.828 9.46 4.64 2.27 -1.34 -0.594 -- 1.88 3.67 20.1 139 21.4 20.5
292.07 0.796 9.42 4.96 2.4 -1.24 -- 2.27 1.98 3.72 20.2 109 21.5 20.2
318.06 0.831 9.46 4.66 2.31 -1.35 -- -- 1.9 3.61 20.1 140 21.4 20.5
551.23 1.09 9.44 5.05 -- -1.9 -- 1.99 2.07 -- 19.37 193 22.2 21.2
398.9 0.936 9.53 4.27 2.46 -- -1.33 -- 1.72 2.55 -- -- -- --
405.11 0.943 9.53 4.31 2.46 -- -- -- 1.73 2.63 -- -- -- --
563.79 1.11 9.45 4.91 -- -2.15 -- -- 2.03 -- 19.39 202 22.1 21.3
870.55 1.37 9.63 -- 2.72 -0.811 -- -- 1.25 3.27 14.14 65 21.7 20.2
759.68 1.29 9.51 4.41 -- -- -- -- 1.79 -- -- -- -- --
893.71 1.4 9.64 -- 2.55 -- -- -- 1.25 2.65 -- -- -- --
867.4 1.37 9.66 -- -- -2.37 -- -- 1.22 -- 13.42 913 21.6 18.7
1272.8 1.67 9.62 -- -- -- -- -- 1.3 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 295.72 temperature 20 90 > th dose independent rect. 22 20
39 316.06 temperature 15 270 > th dose dependent rect. 20 8
45 316.78 temperature 30 270 < th dose dependent rect. 16 14
46 316.92 temperature 30 270 < th dose dependent rect. 15 16
53 317.71 temperature 20 270 > th dose independent rect. 10 17
58 318.30 temperature 10 270 > th dose dependent rect. 10 16
61 318.62 temperature 25 90 < th dose dependent rect. 11 22
62 319.49 temperature 25 90 < th dose dependent rect. 11 20
70 320.15 temperature 25 10 < th dose dependent rect. 14 22
99 322.15 temperature 25 10 < th dose dependent rect. 5 23
111 322.82 temperature 25 10 < th dose dependent rect. 3 23
117 323.00 temperature 25 10 < th dose dependent rect. 11 23
120 323.15 temperature 25 10 < th dose dependent rect. 17 23
121 323.17 temperature 25 10 < th dose dependent rect. 9 23
122 323.23 temperature 25 10 < th dose dependent rect. 19 23
123 323.26 temperature 25 10 < th dose dependent no NA NA
128 323.53 temperature 20 270 > th dose independent rect. 21 7
129 323.53 temperature 25 10 < th dose dependent rect. 1 23
140 323.85 temperature 20 90 > th dose independent sin 7 NA
141 323.85 temperature 20 90 > th dose independent rect. 7 23
158 324.19 temperature 25 10 < th dose dependent rect. 7 23
159 324.21 temperature 25 10 < th dose dependent rect. 21 23
160 324.23 temperature 25 10 < th dose dependent rect. 23 23
187 324.86 temperature 20 90 < th dose independent rect. 10 22
219 325.69 temperature 15 90 > th dose dependent rect. 21 21
233 326.20 temperature 30 720 < th dose dependent rect. 17 4
236 326.25 temperature 10 270 > th dose dependent rect. 19 22
243 326.34 temperature 20 90 > th dose independent no NA NA
249 326.48 temperature 30 10 < th dose dependent rect. 18 14
279 327.15 temperature 15 10 > th dose dependent rect. 22 20
281 327.19 temperature 20 90 < th dose independent rect. 15 21
312 327.70 temperature 20 90 < th dose independent no NA NA
336 328.15 temperature 20 90 < th dose independent rect. 1 23
356 328.45 temperature 20 90 < th dose independent rect. 19 23
360 328.72 temperature 20 30 > th dose independent rect. 10 19
362 328.77 temperature 20 90 < th dose independent rect. 3 23
371 328.92 temperature 20 90 < th dose independent rect. 21 23
372 328.97 temperature 10 270 > th dose dependent sin 10 NA
374 329.05 temperature 20 90 < th dose independent rect. 7 23
428 330.01 temperature 20 90 < th dose independent rect. 23 23
472 330.62 temperature 30 10 < th dose dependent rect. 16 16
516 331.18 temperature 20 90 < th dose independent rect. 5 23
522 331.30 temperature 30 270 < th dose dependent sin 13 NA
608 332.30 temperature 20 90 > th dose independent rect. 13 23
697 333.20 temperature 10 720 > th dose dependent rect. 13 12
721 333.43 temperature 30 720 < th dose dependent rect. 10 13
778 334.07 temperature 30 720 < th dose dependent sin 18 NA
964 335.58 temperature 20 30 > th dose independent rect. 13 16