BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0399300 Os04g0399300|AK105282
(222 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G12880.1 | chr1:4390036-4391046 FORWARD LENGTH=204 166 7e-42
AT3G26690.1 | chr3:9804418-9805398 REVERSE LENGTH=203 165 2e-41
AT1G14860.1 | chr1:5124993-5125805 FORWARD LENGTH=177 111 3e-25
AT2G01670.1 | chr2:296889-297818 REVERSE LENGTH=183 109 1e-24
AT3G12600.1 | chr3:4004809-4005995 FORWARD LENGTH=181 100 1e-21
AT1G18300.1 | chr1:6299841-6300799 FORWARD LENGTH=208 99 2e-21
AT1G73540.1 | chr1:27645880-27646571 REVERSE LENGTH=199 96 1e-20
>AT1G12880.1 | chr1:4390036-4391046 FORWARD LENGTH=204
Length = 203
Score = 166 bits (421), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 103/159 (64%), Gaps = 13/159 (8%)
Query: 20 RKGRLRQRYDGEYRLVAGCVPYRVVAAXXXXXXX------ELEVLMVSTPNRADLVFPKG 73
R GR RQRYD +RLV+GC+PYR++ A +LEVLMVS+PNR DLVFPKG
Sbjct: 7 RTGRDRQRYDNNFRLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRHDLVFPKG 66
Query: 74 GWEDDEDVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKG 133
GWEDDE V EAA REA+EEAGVKG + + LG+W RSKSS G CKG
Sbjct: 67 GWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSS-------TVEDECLGGCKG 119
Query: 134 YMFELEVTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM 172
YMF L+VTEE++ WPE+ RRWL +A L RY WM
Sbjct: 120 YMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWM 158
>AT3G26690.1 | chr3:9804418-9805398 REVERSE LENGTH=203
Length = 202
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 100/158 (63%), Gaps = 10/158 (6%)
Query: 20 RKGRLRQRYDGEYRLVAGCVPYRVVA-----AXXXXXXXELEVLMVSTPNRADLVFPKGG 74
R GR QRYD +RLV+GC+PYR+V + +L+VLM+S+PNR DLVFPKGG
Sbjct: 7 RTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRHDLVFPKGG 66
Query: 75 WEDDEDVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGY 134
WEDDE V EAA REAMEEAGVKG + LG+W RSKSS GG CKGY
Sbjct: 67 WEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEAD-----CCLGGGCKGY 121
Query: 135 MFELEVTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM 172
MF LEV EE+ WPEQ RRWL +A L RY WM
Sbjct: 122 MFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWM 159
>AT1G14860.1 | chr1:5124993-5125805 FORWARD LENGTH=177
Length = 176
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 84/153 (54%), Gaps = 14/153 (9%)
Query: 20 RKGRLRQRYDGEYRLVAGCVPYRVVAAXXXXXXXELEVLMVSTPNRADLVFPKGGWEDDE 79
R GR QRY+ R V GC+PYR+ + E EVL++S+ L+FPKGGWE DE
Sbjct: 7 RTGRQSQRYNKGRRQVVGCIPYRLKISSDGTISDEFEVLVISSQKGHALMFPKGGWELDE 66
Query: 80 DVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGYMFELE 139
V EAA RE++EEAGV GN+ R LG W SKS +G +G+MF +
Sbjct: 67 SVEEAASRESLEEAGVVGNVER-QLGKWDFLSKS-------------KGTFYEGFMFPML 112
Query: 140 VTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM 172
V EE++ WPEQ R W+ +A R WM
Sbjct: 113 VKEELELWPEQHLRQRIWMKVDEARDACRDWWM 145
>AT2G01670.1 | chr2:296889-297818 REVERSE LENGTH=183
Length = 182
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 20 RKGRLRQRYDGEYRLVAGCVPYRVVAAXXXXXXXELEVLMVSTPNRADLVFPKGGWEDDE 79
R GR QRY+ R V GCVPYR + E+EVL++S+ L+FPKGGWE DE
Sbjct: 12 RTGRQFQRYNKGRRQVVGCVPYRFKLSNDGKISDEVEVLVISSQKGHALMFPKGGWELDE 71
Query: 80 DVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGYMFELE 139
V EAA RE +EEAGV GN+ LG W SKS RG +G MF +
Sbjct: 72 SVEEAASRECLEEAGVLGNVEH-QLGKWDFLSKS-------------RGTYYEGLMFPML 117
Query: 140 VTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM 172
VTE+++ WPEQ R W+ +A R WM
Sbjct: 118 VTEQLELWPEQHVRQRIWMNVTEAREACRDWWM 150
>AT3G12600.1 | chr3:4004809-4005995 FORWARD LENGTH=181
Length = 180
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 92/156 (58%), Gaps = 11/156 (7%)
Query: 20 RKGRLRQRYDGEYRLVAGCVPYRVVAAXXXXXXXE---LEVLMVSTPNRADLVFPKGGWE 76
R GRL+QRY+ RLVAGC+P+R V + ++VLM+S+ + L+FPKGGWE
Sbjct: 7 RTGRLQQRYEDGSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWE 66
Query: 77 DDEDVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGYMF 136
+DE V EAA REA+EEAGV+G + LG + +SKS Q SP G CK M+
Sbjct: 67 NDETVREAAAREAVEEAGVRGILMDF-LGNYEFKSKSHQD------EFSPE-GLCKAAMY 118
Query: 137 ELEVTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM 172
L V EE+ WPE T R+WL +A R+ WM
Sbjct: 119 ALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWM 154
>AT1G18300.1 | chr1:6299841-6300799 FORWARD LENGTH=208
Length = 207
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 79/155 (50%), Gaps = 16/155 (10%)
Query: 20 RKGRLRQRYDGE-YRLVAGCVPYRVVAAXXXXXXXE-LEVLMVSTPNRADLVFPKGGWED 77
R GR QRYD YR V GCVPYR + ++VL+VS ++FPKGGWE
Sbjct: 46 RTGRDLQRYDHAGYRQVVGCVPYRYKKQEVNGVETQVIQVLLVSAQKGKGMLFPKGGWET 105
Query: 78 DEDVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGYMFE 137
DE + EAA RE +EEAGV G + LG W +SK GYMF
Sbjct: 106 DESMEEAALRETIEEAGVTGELEE-KLGKWQYKSKR-------------HSIIHDGYMFA 151
Query: 138 LEVTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM 172
L V++E +RWPE RRW+ +A + + WM
Sbjct: 152 LLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWM 186
>AT1G73540.1 | chr1:27645880-27646571 REVERSE LENGTH=199
Length = 198
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
Query: 20 RKGRLRQRYDGE-YRLVAGCVPYRVVAAXXXXXXXELEVLMVSTPNRAD-LVFPKGGWED 77
R GR QRY+ YR V GCVPYR E+EVL++S + ++ PKGGWE
Sbjct: 47 RTGRDLQRYNTAGYRQVVGCVPYR----YKKHGGGEIEVLLISAQKKGKGMLLPKGGWEI 102
Query: 78 DEDVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGYMFE 137
DE + EAA RE +EEAGV G + SLG W +SK G+MF
Sbjct: 103 DESIEEAALRETIEEAGVTGQLEE-SLGKWQYKSKR-------------HTMIHDGHMFP 148
Query: 138 LEVTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM 172
L V+++ + WPE R+W+ ++A L + WM
Sbjct: 149 LLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWM 183
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,375,438
Number of extensions: 120669
Number of successful extensions: 404
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 7
Length of query: 222
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 127
Effective length of database: 8,502,049
Effective search space: 1079760223
Effective search space used: 1079760223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)