BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0399300 Os04g0399300|AK105282
(222 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0399300 Similar to Nudix hydrolase 13, mitochondrial p... 277 4e-75
Os02g0520100 NUDIX hydrolase domain containing protein 195 3e-50
Os11g0531700 NUDIX hydrolase domain containing protein 179 1e-45
Os02g0734300 Similar to Nudix hydrolase 18, mitochondrial p... 100 7e-22
Os07g0212300 Similar to Nudix hydrolase 16, mitochondrial p... 100 1e-21
Os06g0255400 Similar to Nudix hydrolase 18, mitochondrial p... 98 4e-21
>Os04g0399300 Similar to Nudix hydrolase 13, mitochondrial precursor (EC 3.6.1.-)
(AtNUDT13)
Length = 222
Score = 277 bits (709), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 152/184 (82%), Positives = 152/184 (82%)
Query: 20 RKGRLRQRYDGEYRLVAGCVPYRVVAAXXXXXXXELEVLMVSTPNRADLVFPKGGWEDDE 79
RKGRLRQRYDGEYRLVAGCVPYRVVAA ELEVLMVSTPNRADLVFPKGGWEDDE
Sbjct: 20 RKGRLRQRYDGEYRLVAGCVPYRVVAAGGGGGGGELEVLMVSTPNRADLVFPKGGWEDDE 79
Query: 80 DVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGYMFELE 139
DVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGYMFELE
Sbjct: 80 DVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGYMFELE 139
Query: 140 VTEEMDRWPEQATHGRRWLPPADAFRLSRYGWMXXXXXXXXXXXXXXXXXXXXXXXXXHA 199
VTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM HA
Sbjct: 140 VTEEMDRWPEQATHGRRWLPPADAFRLSRYGWMREALAALLDRRCLLLLPPPQPEPSEHA 199
Query: 200 GVYG 203
GVYG
Sbjct: 200 GVYG 203
>Os02g0520100 NUDIX hydrolase domain containing protein
Length = 204
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/158 (67%), Positives = 122/158 (77%), Gaps = 12/158 (7%)
Query: 20 RKGRLRQRYDGEYRLVAGCVPYRVVAAXXXXXXX-----ELEVLMVSTPNRADLVFPKGG 74
R GRLRQRYD EYRLVAGCVPYRV ++EVLMVSTPNRAD+VFPKGG
Sbjct: 10 RTGRLRQRYDNEYRLVAGCVPYRVKKDEANPRILGDVPGQVEVLMVSTPNRADMVFPKGG 69
Query: 75 WEDDEDVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGY 134
WEDDE+VYEAA REAMEEAGVKG +NR +LG WV +SKSSQ+ S SPR GACKGY
Sbjct: 70 WEDDEEVYEAASREAMEEAGVKGIVNRTTLGHWVFKSKSSQN------SSSPR-GACKGY 122
Query: 135 MFELEVTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM 172
+F +EVTEE++ WPEQATHGRRW+ P +A++L RY WM
Sbjct: 123 IFAMEVTEELESWPEQATHGRRWVSPGEAYQLCRYEWM 160
>Os11g0531700 NUDIX hydrolase domain containing protein
Length = 246
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 110/162 (67%), Gaps = 16/162 (9%)
Query: 20 RKGRLRQRYDGEYRLVAGCVPYRVVAAXXXXXXX---------ELEVLMVSTPNRADLVF 70
R+GRLRQRY+G YRLV+GC+PY + L+VLM+STP R+DL+F
Sbjct: 44 RQGRLRQRYEGCYRLVSGCIPYMIKEDGENSSSSLQDDDHVLERLQVLMISTPKRSDLIF 103
Query: 71 PKGGWEDDEDVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGA 130
PKGGWEDDE + EAACREA EEAGVKG ++ LG W+ +SKS Q+ G + GA
Sbjct: 104 PKGGWEDDESIGEAACREAFEEAGVKGVLSGTPLGEWIFKSKSKQNSCGLQ-------GA 156
Query: 131 CKGYMFELEVTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM 172
CKGYMF L+VTE ++ WPEQ THGRRW+P +A+ L RY WM
Sbjct: 157 CKGYMFALQVTELLESWPEQTTHGRRWVPVEEAYGLCRYDWM 198
>Os02g0734300 Similar to Nudix hydrolase 18, mitochondrial precursor (EC 3.6.1.-)
(AtNUDT18)
Length = 160
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 87/154 (56%), Gaps = 21/154 (13%)
Query: 20 RKGRLRQRYDGEY-RLVAGCVPYRVVAAXXXXXXXELEVLMVSTPNRADLVFPKGGWEDD 78
R+GR QRY R+V GC+PYRV + E+EVL++++ ++FPKGGWE D
Sbjct: 7 RQGRELQRYTSAGGRIVVGCIPYRVRSGG------EMEVLVITSQKGHGMMFPKGGWELD 60
Query: 79 EDVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGYMFEL 138
E + EAA REA+EEAGV+G+ SLG W +S+ + +G+MF L
Sbjct: 61 ESMDEAARREALEEAGVRGD-TETSLGCWYYKSRRYDT-------------TYEGFMFPL 106
Query: 139 EVTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM 172
VT+E+ +WPE ++ R W A ++GWM
Sbjct: 107 RVTDELLQWPEMSSRKRTWATVQQAMDGCQHGWM 140
>Os07g0212300 Similar to Nudix hydrolase 16, mitochondrial precursor (EC 3.6.1.-)
(AtNUDT16)
Length = 182
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 95/157 (60%), Gaps = 12/157 (7%)
Query: 20 RKGRLRQRYDGEYRLVAGCVPYRVVAAXXXXX----XXELEVLMVSTPNRADLVFPKGGW 75
R GR +QRY+ RLVAGC+P+R +EVLM+++ + + L+FPKGGW
Sbjct: 7 RTGRHQQRYEHGRRLVAGCIPFRYKDNNDETSDDGHKKLVEVLMINSQSGSGLLFPKGGW 66
Query: 76 EDDEDVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACKGYM 135
E+DE V EAA REA+EEAGV+G++ ++ LG + +SK+ Q E G C+ +
Sbjct: 67 ENDETVEEAAAREAIEEAGVRGDLVQL-LGFYDFKSKTHQDKFCPE-------GMCRAAV 118
Query: 136 FELEVTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM 172
F L V EE+ WPEQ+T R WL ++A SRY W+
Sbjct: 119 FALRVKEELASWPEQSTRKRTWLTLSEAVERSRYPWV 155
>Os06g0255400 Similar to Nudix hydrolase 18, mitochondrial precursor (EC 3.6.1.-)
(AtNUDT18)
Length = 168
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 86/160 (53%), Gaps = 26/160 (16%)
Query: 20 RKGRLRQRYDGEY--RLVAGCVPYRVVAAXXXXXXXELEVLMVSTPNRA----DLV-FPK 72
R+GR QRY R+V GC+PYRV +EVL++S+ + D+V FPK
Sbjct: 8 RQGRELQRYSDNTGGRMVVGCIPYRV-----RGDGGGVEVLVISSQKKGAAAGDVVMFPK 62
Query: 73 GGWEDDEDVYEAACREAMEEAGVKGNINRVSLGMWVMRSKSSQSGGGGEASRSPRGGACK 132
GGWE DE V EAA REA+EEAGV G I SLG W RS+ + +
Sbjct: 63 GGWELDESVDEAARREALEEAGVLGEIG-ASLGRWCYRSRRYDA-------------TYE 108
Query: 133 GYMFELEVTEEMDRWPEQATHGRRWLPPADAFRLSRYGWM 172
G++F L VT+E+DRWPE A R W+ P A + WM
Sbjct: 109 GFVFPLRVTDELDRWPEMAARRRSWVSPQQAMDRCPHWWM 148
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,950,159
Number of extensions: 235738
Number of successful extensions: 1308
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1298
Number of HSP's successfully gapped: 6
Length of query: 222
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 125
Effective length of database: 11,971,043
Effective search space: 1496380375
Effective search space used: 1496380375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)