BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0734300 Os02g0734300|AK059780
(160 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73540.1 | chr1:27645880-27646571 REVERSE LENGTH=199 159 5e-40
AT1G14860.1 | chr1:5124993-5125805 FORWARD LENGTH=177 153 4e-38
AT1G18300.1 | chr1:6299841-6300799 FORWARD LENGTH=208 150 4e-37
AT2G01670.1 | chr2:296889-297818 REVERSE LENGTH=183 148 1e-36
AT1G12880.1 | chr1:4390036-4391046 FORWARD LENGTH=204 116 5e-27
AT3G12600.1 | chr3:4004809-4005995 FORWARD LENGTH=181 113 6e-26
AT3G26690.1 | chr3:9804418-9805398 REVERSE LENGTH=203 108 2e-24
>AT1G73540.1 | chr1:27645880-27646571 REVERSE LENGTH=199
Length = 198
Score = 159 bits (403), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 103/150 (68%), Gaps = 3/150 (2%)
Query: 4 LVARQGRELQRYTSAGGRIVVGCIPYRVRS--GGEMEVLVITSQK-GHGMMFPKGGWELD 60
LV+R GR+LQRY +AG R VVGC+PYR + GGE+EVL+I++QK G GM+ PKGGWE+D
Sbjct: 44 LVSRTGRDLQRYNTAGYRQVVGCVPYRYKKHGGGEIEVLLISAQKKGKGMLLPKGGWEID 103
Query: 61 ESMDXXXXXXXXXXXGVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQWPEMSS 120
ES++ GV G E SLG W YKS+R+ ++G MFPL V+ + WPE
Sbjct: 104 ESIEEAALRETIEEAGVTGQLEESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIWPESEF 163
Query: 121 RKRTWATVQQAMDGCQHGWMREALERLVSR 150
R+R W ++ +A++ CQ+ WMREALE ++R
Sbjct: 164 RQRKWVSLSEAIELCQNSWMREALEAFINR 193
>AT1G14860.1 | chr1:5124993-5125805 FORWARD LENGTH=177
Length = 176
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 101/163 (61%), Gaps = 7/163 (4%)
Query: 1 MAVLVARQGRELQRYTSAGGRIVVGCIPYRVRSGG------EMEVLVITSQKGHGMMFPK 54
M LV+R GR+ QRY + G R VVGCIPYR++ E EVLVI+SQKGH +MFPK
Sbjct: 1 MVCLVSRTGRQSQRY-NKGRRQVVGCIPYRLKISSDGTISDEFEVLVISSQKGHALMFPK 59
Query: 55 GGWELDESMDXXXXXXXXXXXGVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQ 114
GGWELDES++ GV G+ E LG W + S+ T YEGFMFP+ V +EL
Sbjct: 60 GGWELDESVEEAASRESLEEAGVVGNVERQLGKWDFLSKSKGTFYEGFMFPMLVKEELEL 119
Query: 115 WPEMSSRKRTWATVQQAMDGCQHGWMREALERLVSRHATNKLQ 157
WPE R+R W V +A D C+ WM+EAL+ LV R + L+
Sbjct: 120 WPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLK 162
>AT1G18300.1 | chr1:6299841-6300799 FORWARD LENGTH=208
Length = 207
Score = 150 bits (378), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 101/153 (66%), Gaps = 7/153 (4%)
Query: 4 LVARQGRELQRYTSAGGRIVVGCIPYRVR----SGGE---MEVLVITSQKGHGMMFPKGG 56
LV+R GR+LQRY AG R VVGC+PYR + +G E ++VL++++QKG GM+FPKGG
Sbjct: 43 LVSRTGRDLQRYDHAGYRQVVGCVPYRYKKQEVNGVETQVIQVLLVSAQKGKGMLFPKGG 102
Query: 57 WELDESMDXXXXXXXXXXXGVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQWP 116
WE DESM+ GV G+ E LG W YKS+R+ ++G+MF L V+ E +WP
Sbjct: 103 WETDESMEEAALRETIEEAGVTGELEEKLGKWQYKSKRHSIIHDGYMFALLVSQEFERWP 162
Query: 117 EMSSRKRTWATVQQAMDGCQHGWMREALERLVS 149
E R+R W ++ +A + CQ+ WMREALE ++
Sbjct: 163 EAEMRQRRWVSLDEAREVCQNWWMREALEAFIN 195
>AT2G01670.1 | chr2:296889-297818 REVERSE LENGTH=183
Length = 182
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 7/159 (4%)
Query: 1 MAVLVARQGRELQRYTSAGGRIVVGCIPYRVRSGG------EMEVLVITSQKGHGMMFPK 54
M L +R GR+ QRY + G R VVGC+PYR + E+EVLVI+SQKGH +MFPK
Sbjct: 6 MVCLASRTGRQFQRY-NKGRRQVVGCVPYRFKLSNDGKISDEVEVLVISSQKGHALMFPK 64
Query: 55 GGWELDESMDXXXXXXXXXXXGVRGDTETSLGCWYYKSRRYDTTYEGFMFPLRVTDELLQ 114
GGWELDES++ GV G+ E LG W + S+ T YEG MFP+ VT++L
Sbjct: 65 GGWELDESVEEAASRECLEEAGVLGNVEHQLGKWDFLSKSRGTYYEGLMFPMLVTEQLEL 124
Query: 115 WPEMSSRKRTWATVQQAMDGCQHGWMREALERLVSRHAT 153
WPE R+R W V +A + C+ WM+EAL+ LV R ++
Sbjct: 125 WPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSS 163
>AT1G12880.1 | chr1:4390036-4391046 FORWARD LENGTH=204
Length = 203
Score = 116 bits (291), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 95/167 (56%), Gaps = 20/167 (11%)
Query: 1 MAVLVARQGRELQRYTSAGGRIVVGCIPYRVRSGGE------------MEVLVITSQKGH 48
M+VL +R GR+ QRY + R+V GCIPYR+ E +EVL+++S H
Sbjct: 1 MSVLSSRTGRDRQRYDN-NFRLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRH 59
Query: 49 GMMFPKGGWELDESMDXXXXXXXXXXXGVRGDT-ETSLGCWYYKSRRYDTTYE------G 101
++FPKGGWE DE++ GV+G E LG W ++S+ E G
Sbjct: 60 DLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKG 119
Query: 102 FMFPLRVTDELLQWPEMSSRKRTWATVQQAMDGCQHGWMREALERLV 148
+MF L+VT+EL WPE +R+R W TV++A++ C++ WM+ ALE +
Sbjct: 120 YMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFL 166
>AT3G12600.1 | chr3:4004809-4005995 FORWARD LENGTH=181
Length = 180
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 90/159 (56%), Gaps = 16/159 (10%)
Query: 1 MAVLVARQGRELQRYTSAGGRIVVGCIPYRV---------RSGGEMEVLVITSQKGHGMM 51
M LVAR GR QRY G R+V GCIP+R SG ++VL+I+S G G++
Sbjct: 1 MCDLVARTGRLQQRYED-GSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLL 59
Query: 52 FPKGGWELDESMDXXXXXXXXXXXGVRGDTETSLGCWYYKSRRYDTTY--EGF----MFP 105
FPKGGWE DE++ GVRG LG + +KS+ + + EG M+
Sbjct: 60 FPKGGWENDETVREAAAREAVEEAGVRGILMDFLGNYEFKSKSHQDEFSPEGLCKAAMYA 119
Query: 106 LRVTDELLQWPEMSSRKRTWATVQQAMDGCQHGWMREAL 144
L V +EL WPE +R R W T+++A++ C+H WM++AL
Sbjct: 120 LYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158
>AT3G26690.1 | chr3:9804418-9805398 REVERSE LENGTH=203
Length = 202
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 21/168 (12%)
Query: 1 MAVLVARQGRELQRYTSAGGRIVVGCIPYRVRSGGE-----------MEVLVITSQKGHG 49
M+ L AR GR+ QRY + R+V GCIPYR+ E ++VL+I+S H
Sbjct: 1 MSNLSARTGRDHQRYDN-NFRLVSGCIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRHD 59
Query: 50 MMFPKGGWELDESMDXXXXXXXXXXXGVRGDT-ETSLGCWYYKSRRYDTTYE-------- 100
++FPKGGWE DE++ GV+G E LG W ++S+ +
Sbjct: 60 LVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGGCK 119
Query: 101 GFMFPLRVTDELLQWPEMSSRKRTWATVQQAMDGCQHGWMREALERLV 148
G+MF L V +EL WPE R+R W V++A++ C++ WM+ ALE +
Sbjct: 120 GYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEFL 167
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,097,737
Number of extensions: 107985
Number of successful extensions: 182
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 7
Length of query: 160
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 69
Effective length of database: 8,611,713
Effective search space: 594208197
Effective search space used: 594208197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)