BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0197000 Os07g0197000|Os07g0197000
(381 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0197000 Conserved hypothetical protein 601 e-172
Os07g0196300 Cyclin-like F-box domain containing protein 125 4e-29
Os07g0242400 Cyclin-like F-box domain containing protein 93 3e-19
Os07g0198000 84 2e-16
Os07g0242600 Cyclin-like F-box domain containing protein 81 2e-15
Os09g0518400 UDP-glucuronosyl/UDP-glucosyltransferase famil... 76 4e-14
>Os07g0197000 Conserved hypothetical protein
Length = 381
Score = 601 bits (1550), Expect = e-172, Method: Compositional matrix adjust.
Identities = 297/381 (77%), Positives = 297/381 (77%)
Query: 1 MLHPLCLWVLNPATGVTVALPKNHSDEIAAGRGMMMYHGKVESHAFGEISSTGVYKALRI 60
MLHPLCLWVLNPATGVTVALPKNHSDEIAAGRGMMMYHGKVESHAFGEISSTGVYKALRI
Sbjct: 1 MLHPLCLWVLNPATGVTVALPKNHSDEIAAGRGMMMYHGKVESHAFGEISSTGVYKALRI 60
Query: 61 IRFYQRQLCEVIAVDGNNQDMWRKMQGPPATICCSKQMRCVVVDGVVYFMMEFYTTYFEI 120
IRFYQRQLCEVIAVDGNNQDMWRKMQGPPATICCSKQMRCVVVDGVVYFMMEFYTTYFEI
Sbjct: 61 IRFYQRQLCEVIAVDGNNQDMWRKMQGPPATICCSKQMRCVVVDGVVYFMMEFYTTYFEI 120
Query: 121 VVLPVEPGSIASFNLETEKWMTVQGPEVVHRHVQDGDSTYSELNLQLSLADSGGCLVTVH 180
VVLPVEPGSIASFNLETEKWMTVQGPEVVHRHVQDGDSTYSELNLQLSLADSGGCLVTVH
Sbjct: 121 VVLPVEPGSIASFNLETEKWMTVQGPEVVHRHVQDGDSTYSELNLQLSLADSGGCLVTVH 180
Query: 181 NIPPIRMDLWFLTDSETDDGRVYTRSVNKEFRSEDPGTGTCATVFEASRSSYKHFERCYG 240
NIPPIRMDLWFLTDSETDDGRVYTRSVNKEFRSEDPGTGTCATVFEASRSSYKHFERCYG
Sbjct: 181 NIPPIRMDLWFLTDSETDDGRVYTRSVNKEFRSEDPGTGTCATVFEASRSSYKHFERCYG 240
Query: 241 TAVGTGTARYQNPSRWIWPDPTAGRVWYRAKGXXXXXXXXXXXXXXXXXXXGKDDIDXXX 300
TAVGTGTARYQNPSRWIWPDPTAGRVWYRAKG GKDDID
Sbjct: 241 TAVGTGTARYQNPSRWIWPDPTAGRVWYRAKGWDSRSIDAAAASWIDAAASGKDDIDAAA 300
Query: 301 XXXXXXXXXXCFNXXXXXXXXXXXXXXXXXXXXXXXXSATRNDEFXXXXXXXXXXXXXXX 360
CFN SATRNDEF
Sbjct: 301 GNDEFAAAVACFNIATATATGKDDIDAAAAGKDDIDASATRNDEFATAAACFNAAAAGKD 360
Query: 361 XXXXXXXXXXXXXQNPPLAAT 381
QNPPLAAT
Sbjct: 361 EFDAAAAACFNACQNPPLAAT 381
>Os07g0196300 Cyclin-like F-box domain containing protein
Length = 404
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 116/206 (56%), Gaps = 23/206 (11%)
Query: 4 PLCLWVLNPATGVTV----ALPKNHSDEIAAGRGMMMYHGKVESHAFGEISSTGVYKALR 59
PL + VL+P TG T ++ ++ D +++GR +M ES AFG++ STG YK +R
Sbjct: 132 PLDVTVLDPVTGATYIPAKSISADNKDLLSSGRLIM------ESCAFGKVPSTGEYKVVR 185
Query: 60 II------RFYQRQLCEVIAVDGNNQDMWRKMQGPPATICCSKQMRCVVVDGVVYFMMEF 113
++ Y+ CE++ V+ WR +QGP +C S MR VV++GV YF++++
Sbjct: 186 LLGSGNPCELYE---CEIMTVNSAGALQWRAIQGPQLPVCSSNNMRSVVINGVAYFLLDY 242
Query: 114 YTTYFEIVVLPVEPGSIASFNLETEKWMTV-QGPEVVHRHVQDGDSTYSELNLQ--LSLA 170
Y L + PG+I F+LETE+WM + GP+ V R +D S L + LSLA
Sbjct: 243 SRLYCSNDGLLIRPGNIVPFDLETEEWMGILNGPKPVARG-RDMIVISSTLEIMEPLSLA 301
Query: 171 DSGGCLVTVHNIPPIRMDLWFLTDSE 196
D G LV VH + MDLWFL+D E
Sbjct: 302 DLNGSLVMVHAVYGSPMDLWFLSDLE 327
>Os07g0242400 Cyclin-like F-box domain containing protein
Length = 394
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 114/227 (50%), Gaps = 34/227 (14%)
Query: 9 VLNPATGVTVALPKNHSDEIAAGRGMMMYHGKVESHAFGEISSTGVYKALRIIR-----F 63
VL+PATG ALP ++++ GM + AFG+ +STG YK LRI+ +
Sbjct: 127 VLDPATGSVSALPFGIAEDMVRRNGM-----RPAWFAFGQTNSTGEYKLLRILEDLEDGY 181
Query: 64 YQRQLCEVIAVDGNNQDMWRKMQGPPATI--CCSKQMRCVVVDGVVYFMMEFY----TTY 117
+CEV A+ G+ WRKM+ PP + C+ VV +G YF ++ + + Y
Sbjct: 182 EADPVCEVFAI-GDMNGRWRKMESPPGYLDPSCTNG---VVFEGAAYFFLDHWQMDPSYY 237
Query: 118 FEIVVLPVEPGSIASFNLETEKWMT-VQGPEVVHRHVQDGDST--YSELNLQLSLADSGG 174
F G I SF+L TE+W T +QGP V+R +++ + T Y++L +L LA G
Sbjct: 238 FAT-------GCIPSFDLATEQWSTALQGP--VNRILEEANGTLNYADLTDRLMLAQLEG 288
Query: 175 CLVTVH-NIPPIRMDLWFLTDSETDDGRVYTRSVNKEFRSEDPGTGT 220
L T H N +DLWFL D E R +N EF + G G
Sbjct: 289 TLCTAHFNDQISAVDLWFLVDFENGMWSKEYR-INVEFAFDGFGDGV 334
>Os07g0198000
Length = 420
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 102/210 (48%), Gaps = 26/210 (12%)
Query: 9 VLNPATGVTV--ALPKNHSDEIAAGRGMMM---YHGKVESHAFGEISSTGVYKALRIIRF 63
VL+P TG LP + ++E G + +H +HAFG SSTG YK LR+
Sbjct: 137 VLHPVTGAGADDPLPHDLAEENKPWAGWRLEERFHAF--THAFGRASSTGEYKVLRVASL 194
Query: 64 YQ----RQLCEVIAVD----GNNQDMWRKMQGPPATICCSKQMRCVVVDGVVYFM---ME 112
QL EV+A+D + WR M PP + + VV GVV+F+ +
Sbjct: 195 SPDLRVEQLVEVLALDRAGRAHAGARWRGMPRPPFHLAGASNAGMAVVAGVVHFLAVDIP 254
Query: 113 FYTTYFEIVVLPVEPGSIASFNLETEKWM-TVQGPEVVHRHVQDGDSTYSELNLQLSLAD 171
FE + G+IA F+L+TE+W ++GP +H+ QD D + L+L +
Sbjct: 255 LPFLPFEHDDDDIHHGAIARFDLDTEQWRPLLRGPLNIHQIQQDNDLSPP----LLTLTE 310
Query: 172 SGGCLVTVH---NIPPIRMDLWFLTDSETD 198
G LVTVH + MDLWFL DSE +
Sbjct: 311 LKGFLVTVHRDRSHQSSSMDLWFLIDSEEE 340
>Os07g0242600 Cyclin-like F-box domain containing protein
Length = 397
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 106/212 (50%), Gaps = 36/212 (16%)
Query: 9 VLNPATGVTVALPKNHSDEIAAGRGMMMYHGKVE----SHAFGEISSTGVYKALRIIRFY 64
VLNP TG LPK+ ++E YH + S AFG ++STG YK LR+ +
Sbjct: 125 VLNPVTGDVYNLPKSPAEE-------HTYHVNLRKPFTSFAFGHVASTGEYKVLRM---F 174
Query: 65 QR---------QLCEVIAVDGNN-QDMWRKMQGPPATICCSKQMRCVVVDGVVYFMMEFY 114
R QLCEVI V G Q WR Q + C K VVV+GVVYF+++
Sbjct: 175 NRPGFTDLGIPQLCEVITVKGGTGQARWRGKQSREFFVECQKANSGVVVNGVVYFLID-- 232
Query: 115 TTYFEIVV----LPVEPGSIASFNLETEKWMT-VQGPEVVHRHVQDGD--STYSELNLQL 167
+ Y +++ + P I SF+LE E+W +QGP + V D D Y + QL
Sbjct: 233 SVYDSMIIGGDGAGIHPDFICSFDLEVEEWREDIQGP-ISRNFVYDMDFPDEYIAIWDQL 291
Query: 168 SLADSGGCLVTVHN--IPPIRMDLWFLTDSET 197
SLA+ G LV V++ +DLW+L D ET
Sbjct: 292 SLAELKGYLVLVYHQSYRSSTIDLWYLIDYET 323
>Os09g0518400 UDP-glucuronosyl/UDP-glucosyltransferase family protein
Length = 743
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/34 (94%), Positives = 32/34 (94%)
Query: 237 RCYGTAVGTGTARYQNPSRWIWPDPTAGRVWYRA 270
RCYGTAVGTGTARYQNP RWIWPD TAGRVWYRA
Sbjct: 555 RCYGTAVGTGTARYQNPGRWIWPDLTAGRVWYRA 588
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,516,295
Number of extensions: 442019
Number of successful extensions: 1032
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1018
Number of HSP's successfully gapped: 7
Length of query: 381
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 278
Effective length of database: 11,657,759
Effective search space: 3240857002
Effective search space used: 3240857002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)