Os07g0242400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os07g0242400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.48 | 0.494 | 6.63 | -0.979 | 0.672 | -0.962 | -0.579 | -0.23 | -0.673 | 1.92 | 21.88 | 855 | -- | -- |
| 110.53 | 0.49 | 6.62 | -0.943 | 0.666 | -0.927 | -0.612 | -- | -0.652 | 1.9 | 22.01 | 838 | -- | -- |
| 111.71 | 0.492 | 6.63 | -1 | 0.666 | -0.969 | -- | -0.367 | -0.678 | 1.92 | 21.8 | 858 | -- | -- |
| 112.01 | 0.493 | 6.62 | -0.931 | 0.665 | -0.91 | -- | -- | -0.649 | 1.95 | 22.1 | 839 | -- | -- |
| 135.6 | 0.542 | 6.62 | -0.862 | -- | -0.99 | -- | -0.292 | -0.669 | -- | 21.8 | 1807 | -- | -- |
| 145.78 | 0.566 | 6.69 | -1.25 | 0.577 | -- | -0.58 | -- | -0.953 | 2.81 | -- | -- | -- | -- |
| 146.93 | 0.568 | 6.69 | -1.24 | 0.577 | -- | -- | -- | -0.95 | 2.91 | -- | -- | -- | -- |
| 135.53 | 0.542 | 6.62 | -0.779 | -- | -0.972 | -- | -- | -0.644 | -- | 21.8 | 1811 | -- | -- |
| 132.04 | 0.535 | 6.62 | -- | 0.75 | -1.08 | -- | -- | -0.597 | 2 | 21.7 | 889 | -- | -- |
| 166.08 | 0.602 | 6.68 | -1.21 | -- | -- | -- | -- | -0.935 | -- | -- | -- | -- | -- |
| 187.29 | 0.64 | 6.65 | -- | 0.552 | -- | -- | -- | -0.812 | 2.89 | -- | -- | -- | -- |
| 142.57 | 0.556 | 6.57 | -- | -- | -1.43 | -- | -- | -0.456 | -- | 20.5 | 6244 | -- | -- |
| 204.89 | 0.668 | 6.65 | -- | -- | -- | -- | -- | -0.8 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 3 | 105.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 4 | 106.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 9 | 106.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 16 | 107.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 9 |
| 22 | 107.93 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 17 |
| 27 | 108.09 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 47 | 108.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 101 | 109.37 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 119 | 109.62 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 120 | 109.63 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 142 | 109.90 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 173 | 110.23 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 303 | 111.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 317 | 111.81 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |
| 373 | 112.38 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 448 | 113.06 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 464 | 113.13 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 513 | 113.51 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 535 | 113.66 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 12 |
| 543 | 113.70 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 545 | 113.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 553 | 113.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 587 | 113.98 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 15 |
| 623 | 114.20 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 699 | 114.58 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 21 |
| 705 | 114.61 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 13 |
| 728 | 114.81 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 15 |
| 732 | 114.85 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 17 |
| 738 | 114.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 793 | 115.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 819 | 115.30 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 18 |
| 831 | 115.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 13 |