BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0717900 Os06g0717900|AK069070
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0717900 Peptidase A1, pepsin family protein 521 e-148
Os09g0542100 Peptidase A1, pepsin family protein 222 3e-58
Os04g0228000 Peptidase A1, pepsin family protein 215 3e-56
Os02g0751100 Peptidase A1, pepsin family protein 157 1e-38
Os07g0533300 69 6e-12
Os01g0140100 Peptidase A1, pepsin family protein 68 8e-12
>Os06g0717900 Peptidase A1, pepsin family protein
Length = 307
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/268 (95%), Positives = 255/268 (95%)
Query: 1 MPHSSYLALMGLGMEKVSVPSILASTGVVKSNSFSMCFSKDGLGRINFGDTGSADQSETP 60
MPHSSYLALMGLGMEKVSVPSILASTGVVKSNSFSMCFSKDGLGRINFGDTGSADQSETP
Sbjct: 1 MPHSSYLALMGLGMEKVSVPSILASTGVVKSNSFSMCFSKDGLGRINFGDTGSADQSETP 60
Query: 61 FIVKSTHSYYNISITSMSVGDKNLPLGFYAIADSGTSFTYLNDPAYTAYTTNFNAQISER 120
FIVKSTHSYYNISITSMSVGDKNLPLGFYAIADSGTSFTYLNDPAYTAYTTNFNAQISER
Sbjct: 61 FIVKSTHSYYNISITSMSVGDKNLPLGFYAIADSGTSFTYLNDPAYTAYTTNFNAQISER 120
Query: 121 RANFSGSTRSGPFPFEYCYSLSPDQTTVELPVVSLTTNGGAVFPVTSPVYPIAAQMTNGE 180
RANFSGSTRSGPFPFEYCYSLSPDQTTVELPVVSLTTNGGAVFPVTSPVYPIAAQMTNGE
Sbjct: 121 RANFSGSTRSGPFPFEYCYSLSPDQTTVELPVVSLTTNGGAVFPVTSPVYPIAAQMTNGE 180
Query: 181 IRIIGYCLAVIKSDLPIDIIGQNFMTGLKVVFNREKSVLGWQKFDCYKDEKMTDDXXXXX 240
IRIIGYCLAVIKSDLPIDIIGQNFMTGLKVVFNREKSVLGWQKFDCYKDEKMTDD
Sbjct: 181 IRIIGYCLAVIKSDLPIDIIGQNFMTGLKVVFNREKSVLGWQKFDCYKDEKMTDDGSSVG 240
Query: 241 XXXXXXXXTTHVFPQPQESDSPAGRTPI 268
TTHVFPQPQESDSPAGRTPI
Sbjct: 241 SPSPSPGPTTHVFPQPQESDSPAGRTPI 268
>Os09g0542100 Peptidase A1, pepsin family protein
Length = 490
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/224 (52%), Positives = 155/224 (69%), Gaps = 14/224 (6%)
Query: 8 ALMGLGMEKVSVPSILASTGVVKSNSFSMCFSKDGLGRINFGDTGSADQSETPFIVKSTH 67
L+GLGM+ SVPS+LAS G+ +NSFSMCF DG GRINFGDTGS+DQ ETP V +
Sbjct: 214 GLLGLGMDSKSVPSLLASKGLA-ANSFSMCFGDDGHGRINFGDTGSSDQKETPLNVYKQN 272
Query: 68 SYYNISITSMSVGDKNLPLGFYAIADSGTSFTYLNDPAYTAYTTNFNAQISERRANFSGS 127
YYNI+IT ++VG K++ F AI DSGTSFT L+DP YT T++F+AQI R S
Sbjct: 273 PYYNITITGITVGSKSISTEFSAIVDSGTSFTALSDPMYTQITSSFDAQIRSSRNMLDSS 332
Query: 128 TRSGPFPFEYCYSLSPDQTTVELPVVSLTTNGGAVFPVTSPVYPIAAQMTNGEIRIIGYC 187
PFE+CYS+S + + P VSLT GG++FPV P+ I T+ +GYC
Sbjct: 333 -----MPFEFCYSVSANG--IVHPNVSLTAKGGSIFPVNDPIITI----TDNAFNPVGYC 381
Query: 188 LAVIKSDLPIDIIGQNFMTGLKVVFNREKSVLGWQKFDCYK-DE 230
LA++KS+ +++IG+NFM+GLKVVF+RE+ VLGW+ F+CY DE
Sbjct: 382 LAIMKSE-GVNLIGENFMSGLKVVFDRERMVLGWKNFNCYNFDE 424
>Os04g0228000 Peptidase A1, pepsin family protein
Length = 530
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 148/220 (67%), Gaps = 12/220 (5%)
Query: 8 ALMGLGMEKVSVPSILASTGVVKSNSFSMCFSKDGLGRINFGDTGSADQSETPFIVKSTH 67
L GLG++ +S+PSILA G+ SNSF+MCFS+DG+GRI+FGD GS+DQ ETP V H
Sbjct: 251 GLFGLGIDMISIPSILAQKGLT-SNSFAMCFSRDGIGRISFGDQGSSDQEETPLDVNPQH 309
Query: 68 SYYNISITSMSVGDKNLPLGFYAIADSGTSFTYLNDPAYTAYTTNFNAQISERRANFSGS 127
Y ISI+ ++VG+ L F I D+GTSFTYL DPAYT T +F+AQ+ R +
Sbjct: 310 PTYTISISEITVGNSLTDLEFSTIFDTGTSFTYLADPAYTYITQSFHAQVHANR--HAAD 367
Query: 128 TRSGPFPFEYCYSLSPDQTTVELPVVSLTTNGGAVFPVTSPVYPIAAQMTNGEIRIIGYC 187
+R PFEYCY LS + ++ P +SL T GG+VFPV I+ Q YC
Sbjct: 368 SR---IPFEYCYDLSSSEDRIQTPSISLRTVGGSVFPVIDEGQVISIQQHE-----YVYC 419
Query: 188 LAVIKSDLPIDIIGQNFMTGLKVVFNREKSVLGWQKFDCY 227
LA++KS ++IIGQNFMTGL+VVF+RE+ +LGW+KF+CY
Sbjct: 420 LAIVKS-AKLNIIGQNFMTGLRVVFDRERKILGWKKFNCY 458
>Os02g0751100 Peptidase A1, pepsin family protein
Length = 520
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
Query: 8 ALMGLGMEKVSVPSILASTGVVKSNSFSMCFSKDGLGRINFGDTGSADQSETPFI-VKST 66
L+GLGM +SVPS LA G+V+ NSFSMCF KD GRI FGD G Q TPF+ +
Sbjct: 240 GLLGLGMADISVPSFLARAGLVR-NSFSMCFKKDDSGRIFFGDQGVPTQQSTPFVPMNGK 298
Query: 67 HSYYNISITSMSVGDKNLP-LGFYAIADSGTSFTYLNDPAYTAYTTNFNAQISERRANFS 125
Y +++ +G K GF A+ D+GTSFT L AY + T F+ QI+ RA+
Sbjct: 299 LQTYAVNVDKYCIGHKCTEGAGFQALVDTGTSFTSLPLDAYKSITMEFDKQINASRAS-- 356
Query: 126 GSTRSGPFPFEYCYSLSPDQTTVELPVVSLTTNGGAVFPVTSPVYPIAAQMTNGEIRIIG 185
S + FEYCYS P + ++P ++LT F +P+ P + GE +
Sbjct: 357 ----SDDYSFEYCYSTGPLEMP-DVPTITLTFAENKSFQAVNPILPFNDR--QGEFAV-- 407
Query: 186 YCLAVIKSDLPIDIIGQNFMTGLKVVFNREKSVLGWQKFDCYKDEKMT 233
+CLAV+ S P+ IIGQNFM G VVF+RE LGW + +C+ + T
Sbjct: 408 FCLAVLPSPEPVGIIGQNFMVGYHVVFDRENMKLGWYRSECHDLDNST 455
>Os07g0533300
Length = 455
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 105/250 (42%), Gaps = 40/250 (16%)
Query: 8 ALMGLGMEKVSVPSILASTGVVKSNSFSMCFSKD----GLGRINFGD-----TGSADQS- 57
++GLG +S+ S LA FS C D G I FG GS QS
Sbjct: 216 GIVGLGRGPLSLVSQLAV------GRFSYCLRSDMADGGASPILFGSLAKLTEGSVVQST 269
Query: 58 ---ETPFIVKSTHSYYNISITSMSVGDKNLP------------LGFYAIADSGTSFTYLN 102
+ P++ +STH Y N+ T ++V LP LG I DSGT+ TYL
Sbjct: 270 PLLKNPYLQRSTHYYVNL--TGIAVDSTELPVTGSTFGFTQTGLGGGTIVDSGTTLTYLA 327
Query: 103 DPAYTAYTTNFNAQISERRANFSGSTRSGPFPFEYCY--SLSPDQTTVELPVVSLTTNGG 160
Y F +Q++ N + P+ + CY S V +P ++L GG
Sbjct: 328 KDGYAMVKQAFQSQMAN--LNQTTPASGAPYDLDLCYKPSAGGGGKAVRVPRLALRFAGG 385
Query: 161 AVFPVTSPVYPIAAQMTNGEIRIIGYCLAVIKS--DLPIDIIGQNFMTGLKVVFNREKSV 218
A + V Y A + + R+ CL V+ + DLPI IIG + ++++ + +
Sbjct: 386 AKYNVPVQNY-FAGVEADSQGRVTVACLLVLPATDDLPISIIGNLMQMDMHLLYDIDGGM 444
Query: 219 LGWQKFDCYK 228
+ DC K
Sbjct: 445 FSFAPADCAK 454
>Os01g0140100 Peptidase A1, pepsin family protein
Length = 504
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 35/216 (16%)
Query: 29 VKSNSFSMCF-SKDG--LGRINFGDTGSADQSETPFIVKS--THSYYNISITSMSVGDK- 82
+ + +FS C +D + FGD +AD T +++S T ++Y + ++ +SVG +
Sbjct: 306 ISATTFSYCLVDRDSPSSSTLQFGD--AADAEVTAPLIRSPRTSTFYYVGLSGLSVGGQI 363
Query: 83 -NLPLGFYA---------IADSGTSFTYLNDPAYTAYTTNFNAQISERRANFSGSTRSGP 132
++P +A I DSGT+ T L AY A F R S SG
Sbjct: 364 LSIPPSAFAMDSTGAGGVIVDSGTAVTRLQSSAYAALRDAFV------RGTQSLPRTSGV 417
Query: 133 FPFEYCYSLSPDQTTVELPVVSLTTNGGA--VFPVTSPVYPIAAQMTNGEIRIIGYCLAV 190
F+ CY LS D+T+VE+P VSL GG P + + P+ T YCLA
Sbjct: 418 SLFDTCYDLS-DRTSVEVPAVSLRFAGGGELRLPAKNYLIPVDGAGT--------YCLAF 468
Query: 191 IKSDLPIDIIGQNFMTGLKVVFNREKSVLGWQKFDC 226
++ + IIG G +V F+ KS +G+ C
Sbjct: 469 APTNAAVSIIGNVQQQGTRVSFDTAKSTVGFTTNKC 504
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,816,914
Number of extensions: 356862
Number of successful extensions: 733
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 6
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)