Os04g0228000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os04g0228000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.27 | 0.212 | 8.97 | -0.127 | 0.0793 | 0.585 | -0.642 | -0.226 | 0.0581 | 17.8 | 20.8 | 19 | -- | -- |
| 20.3 | 0.21 | 8.96 | -0.0866 | 0.0859 | 0.566 | -0.67 | -- | 0.07 | 17.5 | 20.7 | 18 | -- | -- |
| 21.07 | 0.214 | 8.97 | -0.149 | 0.105 | 0.534 | -- | -0.475 | 0.055 | 15.8 | 20.9 | 19 | -- | -- |
| 21.27 | 0.215 | 8.96 | -0.0675 | 0.112 | 0.499 | -- | -- | 0.0814 | 15.8 | 20.69 | 18 | -- | -- |
| 21.47 | 0.216 | 8.97 | -0.182 | -- | 0.631 | -- | -0.548 | 0.0348 | -- | 20.94 | 24 | -- | -- |
| 24.88 | 0.234 | 8.94 | 0.0421 | 0.298 | -- | -0.251 | -- | 0.167 | 15.3 | -- | -- | -- | -- |
| 25.06 | 0.234 | 8.94 | 0.0372 | 0.296 | -- | -- | -- | 0.165 | 15 | -- | -- | -- | -- |
| 21.73 | 0.217 | 8.96 | -0.0923 | -- | 0.596 | -- | -- | 0.0621 | -- | 20.7 | 21 | -- | -- |
| 21.39 | 0.215 | 8.96 | -- | 0.119 | 0.481 | -- | -- | 0.0886 | 15.6 | 20.67 | 18 | -- | -- |
| 30.08 | 0.256 | 8.94 | 0.0246 | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
| 25.1 | 0.234 | 8.94 | -- | 0.295 | -- | -- | -- | 0.161 | 15 | -- | -- | -- | -- |
| 21.94 | 0.218 | 8.96 | -- | -- | 0.578 | -- | -- | 0.074 | -- | 20.8 | 21 | -- | -- |
| 30.1 | 0.256 | 8.94 | -- | -- | -- | -- | -- | 0.155 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.97 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 15 |
| 3 | 19.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 7 | 19.11 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 18 |
| 8 | 19.15 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 11 | 19.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 14 | 19.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 23 | 19.31 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 35 | 19.39 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 15 |
| 42 | 19.41 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 46 | 19.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 47 | 19.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 51 | 19.44 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 105 | 19.58 | temperature | 15 | 270 | > th | dose dependent | sin | 4 | NA |
| 160 | 19.71 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 21 |
| 165 | 19.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 235 | 19.86 | temperature | 25 | 270 | < th | dose dependent | sin | 4 | NA |
| 242 | 19.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 243 | 19.87 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 260 | 19.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 325 | 19.98 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 350 | 20.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 451 | 20.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 511 | 20.18 | temperature | 25 | 90 | > th | dose independent | rect. | 6 | 12 |
| 544 | 20.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 589 | 20.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 730 | 20.36 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 751 | 20.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 760 | 20.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 21 |
| 762 | 20.39 | temperature | 25 | 10 | > th | dose independent | sin | 1 | NA |
| 785 | 20.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 820 | 20.44 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 846 | 20.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 928 | 20.51 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 957 | 20.54 | temperature | 25 | 90 | > th | dose independent | sin | 0 | NA |
| 973 | 20.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |