Os06g0717900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os06g0717900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.96 | 0.39 | 11.2 | -1.36 | 1.37 | 1.14 | 0.593 | -5.42 | 0.259 | 5.82 | 28.53 | 1232 | -- | -- |
| 72.44 | 0.396 | 11.1 | -0.296 | 1.37 | 0.553 | 0.411 | -- | 0.302 | 5.79 | 26.6 | 2647 | -- | -- |
| 69.79 | 0.389 | 11.2 | -1.26 | 1.37 | 1.07 | -- | -4.81 | 0.252 | 5.82 | 28.28 | 1231 | -- | -- |
| 73.1 | 0.398 | 11.1 | -0.304 | 1.37 | 0.555 | -- | -- | 0.306 | 5.76 | 26.59 | 2647 | -- | -- |
| 166.72 | 0.601 | 11.2 | -1.3 | -- | 1.09 | -- | -4.37 | 0.249 | -- | 27.91 | 1286 | -- | -- |
| 84.36 | 0.431 | 11.1 | -0.129 | 1.39 | -- | 0.634 | -- | 0.319 | 5.56 | -- | -- | -- | -- |
| 85.36 | 0.433 | 11.1 | -0.126 | 1.39 | -- | -- | -- | 0.316 | 5.55 | -- | -- | -- | -- |
| 165.11 | 0.601 | 11.1 | 0.045 | -- | -0.953 | -- | -- | 0.403 | -- | 25.34 | 2743 | -- | -- |
| 75.31 | 0.404 | 11.1 | -- | 1.37 | 0.499 | -- | -- | 0.374 | 5.73 | 27.9 | 2620 | -- | -- |
| 186.47 | 0.638 | 11.1 | -0.0805 | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
| 85.77 | 0.433 | 11.1 | -- | 1.39 | -- | -- | -- | 0.33 | 5.56 | -- | -- | -- | -- |
| 165.16 | 0.601 | 11.1 | -- | -- | -0.946 | -- | -- | 0.397 | -- | 25.34 | 2743 | -- | -- |
| 186.64 | 0.638 | 11.1 | -- | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.23 | humidity | 60 | 4320 | < th | dose dependent | rect. | 17 | 16 |
| 2 | 66.29 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 3 | 66.29 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 19 |
| 4 | 66.32 | humidity | 60 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 19 | 66.42 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 20 | 66.44 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 19 |
| 21 | 66.46 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 18 |
| 22 | 66.60 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 23 | 66.63 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 25 | 66.65 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 29 | 66.74 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 30 | 66.74 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 64 | 66.76 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 71 | 66.82 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 74 | 66.83 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 82 | 66.88 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 83 | 66.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 90 | 66.92 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 135 | 66.99 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 147 | 67.16 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 17 |
| 154 | 67.20 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 176 | 67.26 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 16 |
| 178 | 67.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 218 | 67.37 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 7 |
| 224 | 67.39 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 226 | 67.39 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 231 | 67.41 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 9 |
| 236 | 67.42 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 256 | 67.48 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 283 | 67.58 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 315 | 67.66 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 321 | 67.69 | radiation | 30 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 322 | 67.69 | wind | 1 | 43200 | > th | dose dependent | sin | 3 | NA |
| 347 | 67.72 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 354 | 67.74 | wind | 9 | 43200 | < th | dose dependent | sin | 3 | NA |
| 359 | 67.75 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 409 | 67.88 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 426 | 67.93 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 428 | 67.94 | humidity | 80 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 446 | 67.97 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 454 | 67.97 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 495 | 67.99 | humidity | 50 | 4320 | < th | dose independent | sin | 11 | NA |
| 498 | 67.99 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 576 | 68.17 | humidity | 80 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 598 | 68.22 | wind | 3 | 43200 | > th | dose independent | sin | 4 | NA |
| 618 | 68.23 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 623 | 68.24 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 7 |
| 637 | 68.26 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 638 | 68.26 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 663 | 68.28 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 689 | 68.32 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 724 | 68.38 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 730 | 68.38 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 22 |
| 736 | 68.39 | wind | 3 | 43200 | < th | dose independent | sin | 5 | NA |
| 753 | 68.42 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 767 | 68.43 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 14 |
| 774 | 68.44 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 777 | 68.45 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 811 | 68.49 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 868 | 68.55 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 898 | 68.57 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 8 |
| 900 | 68.58 | humidity | 50 | 4320 | > th | dose independent | sin | 11 | NA |
| 923 | 68.60 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 924 | 68.60 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 934 | 68.61 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 949 | 68.62 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 952 | 68.62 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 981 | 68.66 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 994 | 68.67 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 7 |