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Os09g0542100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0155) R2 : 0.608
β1 : -1.28 (0.0568) R2dD : 0.454 R2D : 0.504
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.315 (0.0331) R2dN8 : 0.105 R2N8 : 0.154
σ : 0.291
deviance : 38.75
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.88 0.265 11.9 -1.26 0.456 0.569 -0.196 -0.0829 0.321 11.6 22.42 10 -- --
31.89 0.263 11.9 -1.26 0.454 0.566 -0.122 -- 0.321 11.6 22.48 9 -- --
31.92 0.263 11.9 -1.26 0.455 0.568 -- 0.0767 0.32 11.6 22.62 9 -- --
31.72 0.262 11.9 -1.26 0.452 0.57 -- -- 0.315 11.5 22.41 5 -- --
34.85 0.276 11.9 -1.27 -- 0.217 -- 0.12 0.315 -- 22.62 9 -- --
37.62 0.288 11.9 -1.28 0.121 -- 0.242 -- 0.314 1.77 -- -- -- --
37.85 0.288 11.9 -1.29 0.121 -- -- -- 0.313 1.62 -- -- -- --
34.84 0.276 11.9 -1.27 -- 0.261 -- -- 0.315 -- 36.88 4 -- --
73.75 0.402 11.9 -- 0.488 0.604 -- -- 0.459 11.7 23.25 6 -- --
38.75 0.291 11.9 -1.28 -- -- -- -- 0.315 -- -- -- -- --
81.44 0.422 11.9 -- 0.0987 -- -- -- 0.456 1.21 -- -- -- --
77.56 0.412 11.9 -- -- 0.279 -- -- 0.457 -- 36.88 4 -- --
82.04 0.423 11.9 -- -- -- -- -- 0.457 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.07 temperature 10.0 270 > th dose dependent rect. 14 15
4 28.66 wind 7.0 270 < th dose independent rect. 19 6
5 28.69 precipitation 0.1 90 < th dose independent rect. 19 8
6 28.69 precipitation 0.1 90 < th dose dependent rect. 19 8
12 28.78 radiation 40.0 90 < th dose dependent rect. 3 16
14 28.79 temperature 30.0 90 < th dose dependent rect. 19 8
15 28.82 temperature 10.0 270 > th dose independent rect. 19 6
16 28.82 temperature 30.0 270 < th dose independent rect. 19 6
17 28.82 humidity 50.0 270 > th dose independent rect. 19 6
18 28.82 atmosphere 995.0 270 > th dose independent rect. 19 6
19 28.82 radiation 1.0 270 < th dose independent rect. 19 6
24 28.82 wind 7.0 90 < th dose independent rect. 19 8
25 28.82 temperature 10.0 270 > th dose independent rect. 1 18
26 28.82 atmosphere 1015.0 270 < th dose independent rect. 1 18
27 28.82 radiation 1.0 270 < th dose dependent rect. 19 6
32 28.82 radiation 1.0 270 < th dose dependent rect. 17 8
37 28.93 temperature 10.0 90 > th dose independent rect. 19 8
38 28.93 temperature 30.0 90 < th dose independent rect. 19 8
39 28.93 humidity 50.0 90 > th dose independent rect. 19 8
41 28.93 atmosphere 995.0 90 > th dose independent rect. 19 8
42 28.93 radiation 1.0 90 < th dose independent rect. 19 8
47 28.93 temperature 10.0 90 > th dose independent rect. 3 16
48 28.93 atmosphere 1015.0 90 < th dose independent rect. 3 16
49 28.93 radiation 10.0 90 < th dose dependent rect. 19 8
55 28.96 precipitation 0.1 270 < th dose independent rect. 19 6
56 28.96 precipitation 0.1 270 < th dose dependent rect. 19 6
58 28.97 precipitation 0.1 270 < th dose independent rect. 1 18
59 28.97 precipitation 0.1 270 < th dose dependent rect. 1 18
60 28.98 wind 9.0 270 < th dose dependent rect. 19 5
61 29.01 radiation 1.0 270 < th dose independent rect. 17 8
62 29.02 wind 9.0 270 < th dose independent rect. 1 18
65 29.05 wind 1.0 270 > th dose independent rect. 19 6
67 29.06 radiation 40.0 270 < th dose independent rect. 14 15
68 29.07 precipitation 0.1 270 < th dose independent rect. 5 9
69 29.07 precipitation 0.1 270 < th dose dependent rect. 5 9
71 29.11 radiation 40.0 90 < th dose independent rect. 3 16
73 29.13 wind 9.0 270 < th dose independent rect. 5 9
74 29.13 temperature 10.0 270 > th dose dependent rect. 24 7
78 29.16 precipitation 0.1 90 < th dose independent rect. 3 16
80 29.16 precipitation 0.1 90 < th dose dependent rect. 3 16
81 29.17 radiation 1.0 270 > th dose independent rect. 5 9
93 29.19 atmosphere 1005.0 270 > th dose independent rect. 24 7
94 29.19 wind 9.0 90 < th dose independent rect. 3 16
95 29.19 radiation 20.0 10 < th dose independent rect. 3 18
96 29.20 temperature 10.0 270 > th dose independent rect. 5 9
97 29.20 atmosphere 995.0 270 > th dose independent rect. 5 9
98 29.20 atmosphere 1015.0 270 < th dose independent rect. 5 9
99 29.20 temperature 10.0 270 > th dose independent rect. 14 15
101 29.22 temperature 10.0 270 > th dose dependent rect. 5 8
102 29.22 radiation 20.0 10 < th dose dependent rect. 4 16
104 29.23 wind 9.0 90 < th dose dependent rect. 19 8
105 29.23 humidity 50.0 90 > th dose dependent rect. 19 8
117 29.31 temperature 20.0 10 > th dose independent rect. 3 18
142 29.34 temperature 15.0 10 > th dose dependent rect. 16 15
144 29.35 radiation 20.0 270 < th dose dependent rect. 24 9
151 29.36 wind 7.0 270 < th dose independent rect. 19 18
165 29.40 wind 9.0 270 < th dose independent rect. 14 15
167 29.40 wind 9.0 270 < th dose dependent rect. 7 17
194 29.43 wind 9.0 270 < th dose independent rect. 7 17
206 29.47 atmosphere 995.0 90 > th dose independent rect. 3 16
213 29.48 humidity 50.0 270 > th dose dependent rect. 19 6
219 29.49 atmosphere 1005.0 90 > th dose independent rect. 3 5
229 29.49 atmosphere 995.0 270 > th dose dependent rect. 24 7
242 29.52 temperature 15.0 270 > th dose independent rect. 24 7
243 29.52 atmosphere 1015.0 270 < th dose independent rect. 24 7
245 29.52 wind 7.0 270 < th dose independent rect. 19 16
246 29.52 atmosphere 995.0 270 > th dose independent rect. 1 18
249 29.53 wind 9.0 270 < th dose independent rect. 24 7
251 29.53 temperature 30.0 270 < th dose independent rect. 24 7
252 29.53 humidity 50.0 270 > th dose independent rect. 24 7
254 29.53 atmosphere 995.0 270 > th dose independent rect. 24 7
255 29.53 radiation 30.0 270 < th dose independent rect. 24 7
258 29.53 temperature 10.0 270 > th dose independent rect. 7 17
268 29.55 humidity 50.0 270 > th dose dependent rect. 24 7
288 29.59 precipitation 0.1 270 < th dose independent rect. 14 15
296 29.59 precipitation 0.1 270 < th dose dependent rect. 14 15
334 29.65 precipitation 0.1 270 < th dose independent rect. 24 7
339 29.65 precipitation 0.1 270 < th dose dependent rect. 24 7
351 29.69 atmosphere 1005.0 270 > th dose independent rect. 3 2
367 29.71 precipitation 0.1 270 < th dose independent rect. 7 17
368 29.71 precipitation 0.1 270 < th dose dependent rect. 7 17
373 29.74 radiation 40.0 270 < th dose independent rect. 11 8
377 29.75 temperature 10.0 270 > th dose independent rect. 13 6
379 29.75 atmosphere 1010.0 270 < th dose independent rect. 13 6
382 29.75 temperature 10.0 270 > th dose independent rect. 19 18
383 29.75 atmosphere 995.0 270 > th dose independent rect. 19 18
387 29.76 precipitation 0.1 270 < th dose independent rect. 19 18
389 29.76 precipitation 0.1 270 < th dose dependent rect. 19 18
402 29.79 precipitation 0.1 270 < th dose independent rect. 13 6
404 29.79 precipitation 0.1 270 < th dose dependent rect. 13 6
412 29.81 wind 1.0 270 > th dose independent rect. 13 6
422 29.82 temperature 30.0 10 < th dose dependent rect. 19 9
427 29.84 wind 9.0 270 < th dose independent rect. 13 6
431 29.84 wind 9.0 270 < th dose dependent rect. 24 7
435 29.85 humidity 50.0 270 > th dose independent rect. 19 16
440 29.86 atmosphere 1005.0 10 > th dose independent rect. 3 5
451 29.87 wind 1.0 270 > th dose independent rect. 11 8
452 29.87 temperature 10.0 270 > th dose independent rect. 11 8
453 29.87 atmosphere 1015.0 270 < th dose independent rect. 11 8
454 29.87 temperature 10.0 270 > th dose independent rect. 19 16
455 29.87 atmosphere 995.0 270 > th dose independent rect. 19 16
456 29.87 precipitation 0.1 270 < th dose independent rect. 19 16
461 29.87 precipitation 0.1 270 < th dose dependent rect. 19 16
465 29.88 temperature 20.0 10 > th dose independent rect. 16 15
518 29.95 precipitation 0.1 270 < th dose independent rect. 11 8
520 29.95 radiation 40.0 270 < th dose independent rect. 24 19
521 29.95 precipitation 0.1 270 < th dose dependent rect. 11 8
565 29.98 humidity 50.0 270 > th dose independent rect. 19 18
582 29.99 temperature 10.0 270 > th dose dependent rect. 13 6
612 30.03 radiation 40.0 270 < th dose independent rect. 13 6
636 30.06 wind 9.0 270 < th dose independent rect. 11 8
649 30.07 atmosphere 995.0 270 > th dose independent rect. 7 17
715 30.13 radiation 1.0 270 < th dose independent rect. 1 11
814 30.21 radiation 1.0 270 < th dose independent rect. 1 16
815 30.21 humidity 50.0 90 > th dose dependent rect. 3 6
867 30.26 humidity 50.0 270 > th dose independent rect. 5 9
915 30.29 wind 9.0 10 < th dose independent rect. 20 7
931 30.30 temperature 10.0 10 > th dose independent rect. 20 7
932 30.30 temperature 30.0 10 < th dose independent rect. 20 7
933 30.30 humidity 50.0 10 > th dose independent rect. 20 7
936 30.30 atmosphere 995.0 10 > th dose independent rect. 20 7
937 30.30 radiation 1.0 10 < th dose independent rect. 20 7
948 30.30 temperature 10.0 10 > th dose independent rect. 3 17
951 30.30 atmosphere 1015.0 10 < th dose independent rect. 3 17
953 30.30 radiation 30.0 90 < th dose dependent rect. 3 7
955 30.30 radiation 1.0 10 < th dose dependent rect. 20 7
974 30.31 wind 9.0 10 < th dose dependent rect. 20 7