FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0751100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.76 (0.0331) R2 : 0.323
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.809 (0.0788) R2dC : 0.157 R2C : 0.114
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.728 (0.0696) R2dN8 : 0.21 R2N8 : 0.167
σ : 0.623
deviance : 177.65
__
_____
C
peak time of C : 12.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
156.58 0.588 4.79 -0.408 0.225 -0.974 -0.711 0.731 -0.774 22 20.12 8 -- --
157.48 0.584 4.77 -0.371 0.152 -0.893 -0.191 -- -0.759 21.4 19.99 6 -- --
157.31 0.584 4.77 -0.375 0.184 -0.904 -- 0.431 -0.759 21.7 20 6 -- --
156.98 0.584 4.79 -0.408 0.222 -0.963 -- -- -0.772 21.8 19.82 4 -- --
158.09 0.586 4.79 -0.415 -- -0.837 -- 0.282 -0.793 -- 20.75 6 -- --
173.74 0.618 4.77 -0.385 0.803 -- -0.00423 -- -0.771 12.5 -- -- -- --
173.74 0.617 4.77 -0.385 0.803 -- -- -- -0.771 12.5 -- -- -- --
158.15 0.586 4.78 -0.407 -- -0.819 -- -- -0.774 -- 20 4 -- --
161.36 0.592 4.78 -- 0.204 -0.946 -- -- -0.727 21.5 19.97 4 -- --
214.21 0.684 4.78 -0.413 -- -- -- -- -0.784 -- -- -- -- --
177.65 0.623 4.76 -- 0.809 -- -- -- -0.728 12.5 -- -- -- --
162.51 0.594 4.77 -- -- -0.82 -- -- -0.729 -- 20 5 -- --
218.7 0.69 4.77 -- -- -- -- -- -0.738 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.73 atmosphere 1000.0 270 > th dose independent rect. 2 15
7 148.33 humidity 80.0 10 < th dose independent rect. 23 13
11 148.83 atmosphere 1000.0 270 > th dose independent rect. 23 8
14 149.16 humidity 80.0 10 < th dose independent rect. 7 5
18 149.41 atmosphere 1000.0 270 > th dose independent rect. 11 20
24 149.82 atmosphere 1000.0 30 > th dose independent rect. 12 21
26 149.93 radiation 1.0 10 > th dose dependent rect. 7 5
27 149.94 radiation 20.0 10 < th dose dependent sin 3 NA
32 150.07 atmosphere 1000.0 30 > th dose independent rect. 12 19
33 150.21 humidity 60.0 90 > th dose dependent rect. 23 10
34 150.26 radiation 20.0 90 < th dose dependent sin 3 NA
40 150.45 humidity 80.0 10 < th dose independent sin 4 NA
42 150.49 atmosphere 1000.0 270 > th dose independent rect. 23 19
43 150.51 humidity 80.0 10 < th dose independent rect. 4 8
62 151.05 humidity 90.0 90 < th dose dependent sin 7 NA
66 151.22 humidity 80.0 10 > th dose independent sin 4 NA
70 151.34 radiation 10.0 30 > th dose independent rect. 7 5
71 151.34 atmosphere 1000.0 270 > th dose independent rect. 1 6
78 151.48 radiation 20.0 10 < th dose dependent rect. 5 13
79 151.51 radiation 10.0 10 < th dose independent sin 2 NA
83 151.58 humidity 50.0 90 > th dose dependent sin 6 NA
86 151.62 atmosphere 995.0 270 > th dose dependent rect. 23 8
95 151.74 humidity 70.0 90 > th dose dependent sin 6 NA
100 151.77 atmosphere 995.0 270 > th dose dependent rect. 1 6
105 151.82 humidity 90.0 270 < th dose independent rect. 18 17
110 151.90 radiation 10.0 90 < th dose independent sin 3 NA
111 151.90 radiation 20.0 90 < th dose dependent rect. 3 15
118 152.01 temperature 15.0 30 > th dose independent rect. 12 19
132 152.15 radiation 10.0 90 < th dose independent rect. 3 15
167 152.44 humidity 80.0 4320 > th dose dependent rect. 13 1
174 152.55 humidity 90.0 30 < th dose dependent rect. 20 16
192 152.69 radiation 10.0 270 < th dose dependent rect. 1 16
193 152.70 radiation 1.0 270 > th dose independent rect. 4 8
216 152.79 radiation 10.0 30 > th dose independent rect. 7 7
246 152.94 temperature 15.0 270 > th dose independent rect. 12 18
255 152.98 humidity 90.0 10 < th dose dependent rect. 7 5
257 153.01 radiation 10.0 10 > th dose independent sin 3 NA
260 153.01 radiation 10.0 270 < th dose dependent rect. 23 18
265 153.10 humidity 90.0 90 < th dose independent rect. 20 16
271 153.13 atmosphere 1000.0 10 > th dose independent rect. 14 17
273 153.14 wind 7.0 270 < th dose independent rect. 17 9
287 153.22 humidity 90.0 30 < th dose dependent rect. 22 14
292 153.29 radiation 10.0 90 < th dose independent rect. 1 17
304 153.37 humidity 90.0 90 < th dose independent rect. 20 18
312 153.43 radiation 10.0 10 < th dose independent rect. 5 13
317 153.46 radiation 10.0 90 > th dose independent sin 4 NA
321 153.49 radiation 10.0 10 < th dose independent rect. 3 15
336 153.59 atmosphere 1000.0 10 > th dose independent rect. 3 17
388 153.67 temperature 15.0 10 > th dose independent rect. 14 17
396 153.71 radiation 20.0 10 < th dose dependent rect. 23 23
399 153.75 radiation 40.0 10 < th dose dependent rect. 13 20
402 153.77 precipitation 0.1 10 < th dose independent rect. 20 16
404 153.77 precipitation 0.1 10 < th dose dependent rect. 20 16
405 153.79 atmosphere 1000.0 4320 < th dose independent rect. 21 1
416 153.86 atmosphere 1000.0 4320 > th dose independent rect. 21 1
429 153.93 humidity 90.0 30 < th dose dependent rect. 24 12
436 153.96 humidity 90.0 30 < th dose dependent rect. 20 18
442 153.99 wind 1.0 270 > th dose independent rect. 2 15
448 154.01 temperature 10.0 1440 > th dose independent rect. 8 5
451 154.01 atmosphere 995.0 1440 > th dose independent rect. 8 5
452 154.01 temperature 10.0 1440 > th dose independent rect. 13 19
455 154.01 radiation 1.0 270 > th dose independent rect. 17 20
461 154.03 humidity 80.0 10 < th dose independent rect. 9 3
463 154.03 humidity 80.0 10 > th dose independent rect. 1 19
469 154.05 temperature 15.0 270 > th dose independent rect. 22 9
490 154.08 precipitation 0.1 270 < th dose independent rect. 7 15
493 154.08 precipitation 0.1 270 < th dose dependent rect. 7 15
506 154.12 humidity 70.0 90 > th dose dependent rect. 23 18
515 154.16 radiation 1.0 10 > th dose dependent sin 6 NA
525 154.20 radiation 20.0 10 < th dose dependent rect. 23 21
531 154.23 atmosphere 1000.0 10 > th dose independent rect. 12 23
537 154.26 humidity 80.0 10 > th dose independent rect. 1 17
538 154.27 radiation 10.0 270 < th dose independent rect. 23 8
549 154.31 humidity 80.0 10 > th dose independent rect. 3 15
552 154.31 humidity 80.0 10 > th dose independent rect. 3 17
554 154.32 atmosphere 995.0 14400 > th dose independent rect. 8 5
560 154.33 radiation 10.0 10 < th dose independent rect. 23 21
561 154.34 precipitation 0.1 270 < th dose independent rect. 6 6
563 154.34 precipitation 0.1 270 < th dose dependent rect. 6 6
573 154.36 wind 9.0 270 < th dose independent rect. 6 6
574 154.36 radiation 10.0 270 < th dose independent rect. 17 9
583 154.38 atmosphere 1015.0 30 < th dose dependent rect. 7 5
585 154.39 humidity 80.0 10 > th dose independent rect. 23 21
590 154.41 precipitation 0.1 30 < th dose independent rect. 7 5
593 154.41 precipitation 0.1 30 < th dose dependent rect. 7 5
594 154.41 radiation 10.0 270 < th dose dependent rect. 23 9
600 154.43 temperature 10.0 270 > th dose independent rect. 6 6
601 154.43 atmosphere 995.0 270 > th dose independent rect. 6 6
602 154.43 atmosphere 1015.0 270 < th dose independent rect. 6 6
604 154.43 radiation 10.0 10 > th dose dependent sin 8 NA
624 154.47 temperature 10.0 30 > th dose independent rect. 7 5
626 154.47 atmosphere 995.0 30 > th dose independent rect. 7 5
627 154.47 atmosphere 1015.0 30 < th dose independent rect. 7 5
630 154.47 precipitation 0.1 270 < th dose independent rect. 18 17
633 154.47 precipitation 0.1 270 < th dose dependent rect. 18 17
635 154.48 precipitation 0.1 270 < th dose independent rect. 17 9
638 154.48 precipitation 0.1 270 < th dose dependent rect. 17 9
640 154.49 radiation 10.0 270 < th dose independent rect. 23 18
643 154.50 temperature 10.0 270 > th dose dependent rect. 1 16
644 154.52 wind 9.0 30 < th dose independent rect. 7 5
658 154.56 humidity 80.0 90 > th dose dependent rect. 23 21
679 154.59 humidity 90.0 10 < th dose dependent rect. 7 7
682 154.61 wind 9.0 30 < th dose independent rect. 20 16
701 154.67 atmosphere 1010.0 10 < th dose independent rect. 12 8
713 154.70 atmosphere 1000.0 4320 < th dose independent rect. 17 1
717 154.72 atmosphere 1015.0 30 < th dose independent rect. 20 16
725 154.74 wind 1.0 270 > th dose independent rect. 17 9
734 154.77 radiation 1.0 30 > th dose dependent rect. 9 3
752 154.80 radiation 10.0 270 < th dose dependent rect. 1 7
759 154.82 atmosphere 995.0 30 > th dose independent rect. 12 8
764 154.83 temperature 10.0 30 > th dose independent rect. 12 8
766 154.83 temperature 10.0 1440 > th dose independent rect. 13 8
771 154.83 temperature 10.0 30 > th dose independent rect. 20 16
772 154.83 temperature 10.0 1440 > th dose independent rect. 21 16
775 154.83 atmosphere 995.0 30 > th dose independent rect. 20 16
776 154.83 atmosphere 995.0 1440 > th dose independent rect. 21 16
777 154.83 radiation 1.0 10 > th dose dependent rect. 13 23
805 154.91 atmosphere 1000.0 4320 > th dose independent rect. 17 1
831 154.98 humidity 70.0 90 > th dose dependent rect. 1 8
835 155.00 wind 9.0 270 < th dose independent rect. 7 16
848 155.05 humidity 50.0 30 > th dose dependent rect. 3 15
851 155.06 atmosphere 1000.0 10 > th dose independent rect. 7 23
864 155.09 temperature 15.0 30 > th dose independent rect. 12 21
869 155.11 humidity 80.0 90 > th dose independent rect. 1 9
880 155.13 radiation 20.0 10 < th dose dependent rect. 21 23
881 155.14 precipitation 0.1 10 < th dose independent rect. 12 8
884 155.14 precipitation 0.1 10 < th dose dependent rect. 12 8
886 155.15 wind 1.0 30 > th dose independent rect. 12 8
887 155.15 humidity 80.0 10 > th dose independent rect. 1 9
901 155.18 atmosphere 1015.0 270 < th dose independent rect. 7 16
911 155.20 humidity 50.0 270 > th dose independent rect. 17 9
919 155.22 humidity 50.0 270 > th dose independent rect. 6 6
928 155.24 wind 9.0 30 < th dose independent rect. 12 19
930 155.24 humidity 70.0 90 > th dose dependent rect. 1 17
931 155.25 temperature 25.0 270 < th dose independent rect. 7 4
964 155.31 humidity 80.0 90 > th dose independent rect. 23 10
968 155.32 humidity 80.0 10 > th dose independent rect. 3 13
970 155.32 radiation 40.0 90 < th dose dependent rect. 12 19
981 155.36 radiation 20.0 90 < th dose independent rect. 12 19
998 155.41 wind 5.0 14400 > th dose independent rect. 14 2