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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0140100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.84 (0.0623) R2 : 0.39
β1 : -3.2 (0.233) R2dD : 0.282 R2D : 0.145
β2 : 1.46 (0.15) R2dC : 0.129 R2C : 0.126
β3 : 1.27 (0.179) R2dE : 0.0735 R2E : -0.0355
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.81 (0.144) R2dN8 : 0.0759 R2N8 : -0.0439
σ : 1.13
deviance : 592.33
__
_____
C
peak time of C : 2.65
E
wheather : temperature
threshold : 25.2
memory length : 8314
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
581.27 1.13 7.99 -5.35 1.45 2.68 -0.559 -14.2 -0.203 2.91 30.44 1242 -- --
602.67 1.14 7.77 -3.39 1.33 1.15 -0.966 -- -0.653 3.21 23.31 8268 -- --
582.29 1.12 7.99 -5.38 1.45 2.68 -- -14.3 -0.201 2.95 30.21 1242 -- --
592.33 1.13 7.84 -3.2 1.46 1.27 -- -- -0.81 2.65 25.2 8314 -- --
697.15 1.23 8.02 -5.53 -- 2.79 -- -12.8 -0.496 -- 28.49 1217 -- --
645.02 1.19 7.76 -2.68 1.59 -- -0.365 -- -0.41 2.72 -- -- -- --
645.49 1.19 7.76 -2.67 1.59 -- -- -- -0.408 2.73 -- -- -- --
713.56 1.24 7.78 -3.09 -- 1.41 -- -- -0.485 -- 25.34 2620 -- --
818.11 1.33 7.77 -- 1.55 0.575 -- -- -0.329 2.54 30.4 8449 -- --
792.07 1.32 7.75 -2.6 -- -- -- -- -0.368 -- -- -- -- --
833.51 1.35 7.69 -- 1.54 -- -- -- -0.111 2.72 -- -- -- --
901.42 1.4 7.67 -- -- -1.7 -- -- -0.00993 -- 25.34 2620 -- --
970.84 1.45 7.69 -- -- -- -- -- -0.0791 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 565.37 humidity 50 1440 < th dose dependent rect. 16 1
2 565.44 humidity 50 1440 < th dose independent rect. 16 1
3 569.79 radiation 1 720 > th dose dependent rect. 18 11
4 570.56 radiation 10 1440 < th dose dependent rect. 18 9
5 570.84 radiation 1 720 > th dose dependent rect. 18 1
18 571.39 radiation 10 1440 < th dose dependent rect. 18 7
21 572.29 humidity 80 43200 < th dose dependent rect. 22 1
22 572.49 temperature 30 720 > th dose dependent rect. 18 1
39 574.08 radiation 1 720 > th dose independent rect. 18 11
42 574.93 humidity 50 1440 > th dose independent rect. 16 1
43 574.96 radiation 10 1440 < th dose dependent rect. 18 2
47 575.60 radiation 30 1440 > th dose independent rect. 16 16
51 576.40 radiation 1 720 > th dose independent rect. 18 1
63 577.30 wind 3 43200 < th dose independent rect. 2 2
65 577.30 radiation 30 1440 > th dose dependent rect. 13 20
69 577.37 radiation 40 1440 > th dose dependent rect. 13 1
70 577.41 humidity 80 43200 < th dose dependent rect. 24 1
71 577.43 radiation 40 1440 > th dose dependent sin 13 NA
73 577.44 temperature 30 4320 > th dose dependent rect. 18 1
89 577.46 wind 3 43200 > th dose independent rect. 2 2
106 577.79 humidity 70 720 < th dose dependent rect. 18 1
108 577.88 humidity 70 720 < th dose dependent rect. 18 13
122 578.10 humidity 70 720 < th dose independent rect. 17 14
125 578.12 wind 9 43200 < th dose independent rect. 3 12
143 578.22 humidity 70 720 < th dose independent rect. 17 3
157 578.39 wind 7 43200 > th dose dependent rect. 10 4
166 578.79 wind 9 43200 > th dose independent rect. 9 6
169 578.88 humidity 80 43200 < th dose dependent rect. 22 8
182 578.99 wind 9 43200 > th dose independent rect. 24 15
183 579.01 wind 9 43200 > th dose independent rect. 2 13
187 579.10 humidity 70 14400 < th dose dependent rect. 17 1
188 579.14 wind 7 43200 > th dose dependent rect. 3 12
191 579.21 wind 9 43200 < th dose independent rect. 9 6
196 579.25 wind 1 43200 < th dose dependent rect. 1 1
197 579.25 radiation 20 1440 > th dose dependent rect. 16 16
231 579.44 humidity 70 14400 < th dose independent rect. 17 2
233 579.53 humidity 70 720 > th dose independent rect. 16 9
250 579.60 wind 7 43200 > th dose dependent rect. 24 15
282 580.11 wind 9 43200 > th dose independent rect. 19 20
283 580.13 radiation 1 1440 < th dose independent rect. 18 9
285 580.14 humidity 70 14400 < th dose independent rect. 17 15
288 580.18 radiation 30 14400 > th dose independent rect. 16 1
306 580.29 radiation 1 1440 < th dose independent rect. 18 7
314 580.43 radiation 20 1440 < th dose independent rect. 16 16
329 580.71 humidity 80 43200 < th dose dependent rect. 5 1
332 580.76 radiation 20 1440 > th dose dependent rect. 6 2
347 580.78 humidity 70 14400 < th dose independent rect. 17 5
389 581.11 wind 9 43200 < th dose independent rect. 10 4
396 581.21 wind 9 43200 < th dose independent rect. 19 20
403 581.34 radiation 1 1440 < th dose independent rect. 18 2
410 581.46 radiation 40 1440 < th dose independent rect. 13 21
412 581.47 radiation 30 1440 > th dose independent rect. 7 1
431 581.52 wind 7 43200 > th dose dependent rect. 12 2
435 581.56 wind 3 43200 > th dose independent rect. 2 5
448 581.69 temperature 30 720 > th dose independent rect. 18 1
478 581.78 humidity 80 43200 < th dose independent rect. 24 1
480 581.79 radiation 30 1440 < th dose independent rect. 24 8
483 581.81 wind 1 90 < th dose independent rect. 4 1
485 581.82 radiation 30 14400 > th dose dependent rect. 16 1
553 582.39 temperature 25 720 > th dose dependent sin 12 NA
602 582.67 radiation 40 1440 < th dose independent rect. 13 2
631 582.99 humidity 80 43200 > th dose independent rect. 1 1
632 583.00 humidity 80 43200 > th dose independent rect. 3 1
637 583.05 humidity 70 1440 < th dose dependent rect. 16 15
668 583.12 wind 9 43200 < th dose independent rect. 13 1
676 583.19 radiation 40 1440 < th dose dependent rect. 16 16
679 583.21 radiation 20 1440 < th dose independent rect. 6 2
681 583.21 wind 3 43200 > th dose dependent rect. 6 1
682 583.23 radiation 40 1440 < th dose independent sin 12 NA
684 583.23 radiation 20 1440 < th dose independent rect. 19 13
706 583.26 humidity 80 43200 < th dose independent rect. 3 1
709 583.27 radiation 40 43200 < th dose independent rect. 10 1
740 583.43 humidity 50 1440 > th dose independent rect. 15 12
743 583.44 humidity 50 1440 > th dose independent rect. 15 10
754 583.52 wind 1 90 < th dose dependent rect. 4 1
755 583.53 humidity 80 43200 > th dose independent rect. 1 4
761 583.55 radiation 20 1440 < th dose independent rect. 2 6
764 583.57 temperature 30 1440 > th dose dependent rect. 13 6
779 583.58 wind 7 43200 > th dose dependent sin 4 NA
805 583.63 humidity 50 1440 > th dose independent rect. 15 5
834 583.73 radiation 40 1440 < th dose independent rect. 13 14
851 583.79 radiation 40 1440 < th dose independent rect. 13 12
854 583.80 humidity 60 14400 > th dose independent rect. 17 1
894 583.88 radiation 40 43200 > th dose dependent rect. 10 1
929 584.01 radiation 40 1440 < th dose independent rect. 13 7
934 584.03 radiation 40 1440 < th dose independent rect. 13 5
976 584.09 humidity 70 1440 < th dose dependent sin 13 NA
997 584.17 radiation 40 1440 > th dose independent rect. 13 21