BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0714800 Os06g0714800|AK059793
(136 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0714800 Protein of unknown function DUF581 family protein 178 8e-46
Os06g0125200 Protein of unknown function DUF581 family protein 79 7e-16
Os02g0686700 Protein of unknown function DUF581 family protein 72 1e-13
Os04g0585700 Protein of unknown function DUF581 family protein 72 1e-13
Os02g0686900 69 8e-13
Os04g0586000 Protein of unknown function DUF581 family protein 67 4e-12
AK060089 67 4e-12
>Os06g0714800 Protein of unknown function DUF581 family protein
Length = 136
Score = 178 bits (452), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 94/136 (69%), Positives = 94/136 (69%)
Query: 1 MEEIAGGGSPPAMEEEERYVEVASRFYRVKPXXXXXXXXRRLHFLESCFLCKSSIAGDRD 60
MEEIAGGGSPPAMEEEERYVEVASRFYRVKP RRLHFLESCFLCKSSIAGDRD
Sbjct: 1 MEEIAGGGSPPAMEEEERYVEVASRFYRVKPGAGGGGGGRRLHFLESCFLCKSSIAGDRD 60
Query: 61 IFMYRGDAAFCSDDCRQEQMDMDEALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
IFMYRGDAAFCSDDCRQEQMDMDEALQ
Sbjct: 61 IFMYRGDAAFCSDDCRQEQMDMDEALQAVARRHRLRSSAAPASAEAAAAAPARSPMMHRR 120
Query: 121 XTIANFAARTPVAATS 136
TIANFAARTPVAATS
Sbjct: 121 PTIANFAARTPVAATS 136
>Os06g0125200 Protein of unknown function DUF581 family protein
Length = 144
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 10/81 (12%)
Query: 16 EERYVEVASRFYRVKPXXXXXXXXRR----------LHFLESCFLCKSSIAGDRDIFMYR 65
E RYV+V SRF+ V H+L++CFLCK I +R IFMY+
Sbjct: 3 ESRYVKVDSRFFLVDDNSSSSSSSCAAAGGGGGDGDYHYLDACFLCKRDITFNRHIFMYK 62
Query: 66 GDAAFCSDDCRQEQMDMDEAL 86
G+AAFCSDDCRQ+QMDMD AL
Sbjct: 63 GNAAFCSDDCRQDQMDMDSAL 83
>Os02g0686700 Protein of unknown function DUF581 family protein
Length = 92
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 38/45 (84%)
Query: 43 HFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDEALQ 87
HFL++CFLC+ +AG+RDIFMYRGD FCS++CR+EQM+ D A +
Sbjct: 8 HFLDACFLCRKRLAGNRDIFMYRGDTPFCSEECRREQMEADAAAE 52
>Os04g0585700 Protein of unknown function DUF581 family protein
Length = 150
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 39/45 (86%)
Query: 43 HFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDEALQ 87
HFLE+CFLC+ +A +RDI+MYRGD FCS++CR+EQ++MD+ ++
Sbjct: 68 HFLEACFLCRKPLASNRDIYMYRGDIPFCSEECRREQIEMDDEME 112
>Os02g0686900
Length = 125
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 37/46 (80%)
Query: 40 RRLHFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDEA 85
R H+L++CFLC +AG++DIFMYRGD FCS++CRQ Q+D D+A
Sbjct: 45 RHHHYLDACFLCGRMLAGNKDIFMYRGDTPFCSEECRQRQIDADDA 90
>Os04g0586000 Protein of unknown function DUF581 family protein
Length = 127
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 43 HFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDEA 85
H+L+ CF C+ + G+RDIFMYRGD FCS++CRQEQ+++DEA
Sbjct: 54 HYLDICFRCRRPLGGNRDIFMYRGDMPFCSEECRQEQIEIDEA 96
>AK060089
Length = 127
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 43 HFLESCFLCKSSIAGDRDIFMYRGDAAFCSDDCRQEQMDMDEA 85
H+L+ CF C+ + G+RDIFMYRGD FCS++CRQEQ+++DEA
Sbjct: 54 HYLDICFRCRRPLGGNRDIFMYRGDMPFCSEECRQEQIEIDEA 96
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.134 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,396,394
Number of extensions: 85189
Number of successful extensions: 201
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 7
Length of query: 136
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 46
Effective length of database: 12,336,541
Effective search space: 567480886
Effective search space used: 567480886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 150 (62.4 bits)