BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0687600 Os06g0687600|Os06g0687600
(336 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0687600 Protein of unknown function DUF579, plant fami... 538 e-153
Os04g0649900 Protein of unknown function DUF579, plant fami... 276 1e-74
Os02g0158500 Protein of unknown function DUF579, plant fami... 227 1e-59
Os12g0204500 Protein of unknown function DUF579, plant fami... 173 2e-43
Os11g0490100 Protein of unknown function DUF579, plant fami... 122 5e-28
Os11g0242600 Protein of unknown function DUF579, plant fami... 102 6e-22
>Os06g0687600 Protein of unknown function DUF579, plant family protein
Length = 336
Score = 538 bits (1385), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/326 (82%), Positives = 270/326 (82%)
Query: 1 MKGLSGPKLLVVHPSSNKPLGGAASPAMAVLGSRRRMWVVLFLAGFACVSLGTMLCAARD 60
MKGLSGPKLLVVHPSSNKPLGGAASPAMAVLGSRRRMWVVLFLAGFACVSLGTMLCAARD
Sbjct: 1 MKGLSGPKLLVVHPSSNKPLGGAASPAMAVLGSRRRMWVVLFLAGFACVSLGTMLCAARD 60
Query: 61 HXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXLPGYVFDALVQYASAGGNSTASMP 120
H R LPGYVFDALVQYASAGGNSTASMP
Sbjct: 61 HPPPPVAARRLAAAEAQAATLAVSARGGGAGGGGGGLPGYVFDALVQYASAGGNSTASMP 120
Query: 121 GGDXXXXXXXXXXXXPCNFLVFGLGGETPLWRALNHGGRTVFLDENQYYVSHLEGRHPGL 180
GGD PCNFLVFGLGGETPLWRALNHGGRTVFLDENQYYVSHLEGRHPGL
Sbjct: 121 GGDVRAIAAVVKRRAPCNFLVFGLGGETPLWRALNHGGRTVFLDENQYYVSHLEGRHPGL 180
Query: 181 EAYDVVYTTTVREFPXXXXXXXXXXSAECRPVQNLLYSDCRLAINDLPNQLYDVAWDIIL 240
EAYDVVYTTTVREFP SAECRPVQNLLYSDCRLAINDLPNQLYDVAWDIIL
Sbjct: 181 EAYDVVYTTTVREFPDLLDAARAARSAECRPVQNLLYSDCRLAINDLPNQLYDVAWDIIL 240
Query: 241 VDGPRGYTAASPGRMSAIFTAGVMARSRAEKGAETDVLVHDYEREVERACSREFLCEENR 300
VDGPRGYTAASPGRMSAIFTAGVMARSRAEKGAETDVLVHDYEREVERACSREFLCEENR
Sbjct: 241 VDGPRGYTAASPGRMSAIFTAGVMARSRAEKGAETDVLVHDYEREVERACSREFLCEENR 300
Query: 301 VEETSTRSLAHFVVPGGRDLRRETFC 326
VEETSTRSLAHFVVPGGRDLRRETFC
Sbjct: 301 VEETSTRSLAHFVVPGGRDLRRETFC 326
>Os04g0649900 Protein of unknown function DUF579, plant family protein
Length = 318
Score = 276 bits (707), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 141/243 (58%), Positives = 169/243 (69%), Gaps = 8/243 (3%)
Query: 97 LPGYVFDALVQYASAGGNSTASMPGGDXXXXXXXXXXXXPCNFLVFGLGGETPLWRALNH 156
LP VFDALV +AS N+T M D PCN LVFGLG E+PLW ALNH
Sbjct: 74 LPLPVFDALVHFASIS-NATHRMSDTDIRAISAVLRARGPCNLLVFGLGAESPLWLALNH 132
Query: 157 GGRTVFLDENQYYVSHLEGRHPGLEAYDVVYTTTVREFPXXXXXXXXXXSAECRPVQNLL 216
GGRTVFL+EN++YV +LE RHPGLEAYDV YTT VR+F +AECRP+QNLL
Sbjct: 133 GGRTVFLEENEFYVKYLEPRHPGLEAYDVSYTTKVRDFRDLLDAARASRAAECRPIQNLL 192
Query: 217 YSDCRLAINDLPNQLYDVAWDIILVDGPRGYTAASPGRMSAIFTAGVMARS--RAEKGAE 274
+S+CRLAINDLPN LYDVAWDI+L+DGP G+ SPGRM +IFT V+AR+ A KG
Sbjct: 193 FSECRLAINDLPNDLYDVAWDIVLIDGPSGWNPTSPGRMPSIFTTAVLARTGATAAKG-P 251
Query: 275 TDVLVHDYEREVERACSREFLCEENRVEETSTRSLAHFVV-PGGRDLRRETFCAGGGGSG 333
TDVLVHD++ E+E+ S+EFLC+ENRV + T SL HFVV P G RR+ FC+G +
Sbjct: 252 TDVLVHDFQFELEQVLSKEFLCDENRVAGSGTPSLGHFVVRPDG---RRDAFCSGQDSTA 308
Query: 334 AST 336
A T
Sbjct: 309 AGT 311
>Os02g0158500 Protein of unknown function DUF579, plant family protein
Length = 258
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/261 (53%), Positives = 152/261 (58%), Gaps = 18/261 (6%)
Query: 1 MKGLSGPKLLVVHPSSN-----KPLGGAASPAMAV------LGSRRR---MWVVLFLAGF 46
MKG+SGPKLLVVHP+S L GAASP + LGSRRR V L LA
Sbjct: 1 MKGMSGPKLLVVHPASKGYNGVVSLSGAASPGPSAASMPLFLGSRRRCCAWLVALLLALL 60
Query: 47 ACVSLGTMLCAARDHXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXLPGYVFDALV 106
CVSL T+ AR LP YVFDALV
Sbjct: 61 TCVSLLTVFSTAR---AASEGAALPQRARLTVAGAAGAAAASAAVGAAGGLPAYVFDALV 117
Query: 107 QYASAGGNSTA-SMPGGDXXXXXXXXXXXXPCNFLVFGLGGETPLWRALNHGGRTVFLDE 165
QYA+A G + SMP D PC LVFGLG ETPLWRALNHGGRTVFLDE
Sbjct: 118 QYAAAAGANATASMPEEDVRAIASVLRRRAPCRLLVFGLGAETPLWRALNHGGRTVFLDE 177
Query: 166 NQYYVSHLEGRHPGLEAYDVVYTTTVREFPXXXXXXXXXXSAECRPVQNLLYSDCRLAIN 225
N +YV+H+EG PGLEAYDV Y T VREFP SA+CRPVQNLL+SDCRLAIN
Sbjct: 178 NPFYVAHVEGALPGLEAYDVSYATAVREFPDLLDAARAAQSADCRPVQNLLFSDCRLAIN 237
Query: 226 DLPNQLYDVAWDIILVDGPRG 246
DLPNQLYDV+WD+ILVDGP G
Sbjct: 238 DLPNQLYDVSWDVILVDGPSG 258
>Os12g0204500 Protein of unknown function DUF579, plant family protein
Length = 295
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 125/230 (54%), Gaps = 4/230 (1%)
Query: 97 LPGYVFDALVQYASAGGNSTASMPGGDXXXXXXXXXXXXPCNFLVFGLGGETPLWRALNH 156
LP V A+V YA+A N T + PCNFLVFGLG ++ +W ALNH
Sbjct: 69 LPAAVAQAMVHYATA--NVTPQQTAAEIGVSLRVLQLRAPCNFLVFGLGLDSAMWAALNH 126
Query: 157 GGRTVFLDENQYYVSHLEGRHPGLEAYDVVYTTTVREFPXXXXXXXXXXSAECRPVQNLL 216
GGRTVFL+E+ +++ ++ HPGLE+Y V Y T V + +
Sbjct: 127 GGRTVFLEEDASWIASVKAGHPGLESYHVAYDTRVTDADELIALRHEPACTSQPDLAAAA 186
Query: 217 YSDCRLAINDLPNQLYDVAWDIILVDGPRGYTAASPGRMSAIFTAGVMARSRAEKGAETD 276
+ CRLA+ LP ++V WD+I+VD P G+T SPGRM AI+TAG+ AR+R T+
Sbjct: 187 AASCRLALRGLPPVFHEVEWDLIMVDAPTGWTPESPGRMGAIYTAGMAARARTPGAGATE 246
Query: 277 VLVHDYEREVERACSREFLCEENRVEETSTRSLAHFVVPGGRDLRRETFC 326
V VHD +R VE S+ FLC+ VE+ + FV+P RD FC
Sbjct: 247 VFVHDVDRHVEDTFSKAFLCDGYLVEQVG--RIRRFVIPSHRDKDGTPFC 294
>Os11g0490100 Protein of unknown function DUF579, plant family protein
Length = 302
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 111/185 (60%), Gaps = 15/185 (8%)
Query: 141 VFGLGGETPLWRALNHGGRTVFLDENQYYVSHLEGRHPGLEAYDVVYTT----------T 190
VFGLG ++PLW ALN GG TVFL+E+ + S + G+ P L + V Y T T
Sbjct: 98 VFGLGHDSPLWHALNPGGATVFLEEDPSWYSVVRGQSPFLRGHLVAYRTRLDHADRLLAT 157
Query: 191 VREFPXXXXXXXXXXSAECRPVQNLLYSDCRLAINDLPNQLYDVAWDIILVDGPRGYTAA 250
++ P + V+ ++C LA+++LP ++Y+ WD++++D P+GY A+
Sbjct: 158 YKDHPSCLPGGGGNGGGDVPRVRG--NAECPLALHNLPAEVYEKEWDMVMIDAPKGYFAS 215
Query: 251 SPGRMSAIFTAGVMARSRAEKGAETDVLVHDYEREVERACSREFLCEENRVEETSTRSLA 310
+PGRM+A++TA MAR R +G +TDV +HD +R VE+A + EFLCE RV T L
Sbjct: 216 APGRMAAVWTAAAMARGRRGEG-DTDVFLHDVDRRVEKAYAEEFLCERFRVGATG--RLW 272
Query: 311 HFVVP 315
HF +P
Sbjct: 273 HFRIP 277
>Os11g0242600 Protein of unknown function DUF579, plant family protein
Length = 316
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 98/210 (46%), Gaps = 12/210 (5%)
Query: 97 LPGYVFDALVQYASAGGNSTA-----SMPGGDXXXXXXXXXXXXPCNFLVFGLGGETPLW 151
+P V +ALV YA++ N+TA + PCN LVFGLG LW
Sbjct: 82 VPAGVAEALVHYATS--NATAWGRGRRRSAEEVAATARAVSRRAPCNLLVFGLGHGAALW 139
Query: 152 RALNHGGRTVFLDENQYYVSHLEGRHPGLEAYDVVYTTTVREFPXXXXXXXXXXSAECRP 211
ALNHGGRTVFL+E+ VS +EAY V Y + +
Sbjct: 140 AALNHGGRTVFLEEDDALVSGASPASLAIEAYRVAYLASAADADELLALRDSEHCTGAAA 199
Query: 212 VQ----NLLYSDCRLAINDLPNQLYDVAWDIILVDGPRGYTAASPGRMSAIFTAGVMARS 267
Q + S C+LA+ LP Y+ WD+I+VD + M AI+TA V AR+
Sbjct: 200 TQLSPGHFDRSPCKLAVRGLPAAFYEAEWDVIVVDAHAPPPPTTTAMMGAIYTAAVAARA 259
Query: 268 RAEKG-AETDVLVHDYEREVERACSREFLC 296
R ETDV+VHD ++ V+ S FLC
Sbjct: 260 RRPAAETETDVVVHDVDKPVQDRFSTAFLC 289
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,970,797
Number of extensions: 435051
Number of successful extensions: 1117
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1106
Number of HSP's successfully gapped: 6
Length of query: 336
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 235
Effective length of database: 11,762,187
Effective search space: 2764113945
Effective search space used: 2764113945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)