BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0669800 Os06g0669800|AK073551
(227 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0669800 Ovarian tumour, otubain domain containing protein 387 e-108
Os02g0168600 Ovarian tumour, otubain domain containing protein 334 3e-92
Os03g0859800 Ovarian tumour, otubain domain containing protein 207 4e-54
Os03g0589300 Ovarian tumour, otubain domain containing protein 197 5e-51
Os02g0819500 Ovarian tumour, otubain domain containing protein 129 2e-30
>Os06g0669800 Ovarian tumour, otubain domain containing protein
Length = 227
Score = 387 bits (994), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/196 (93%), Positives = 184/196 (93%)
Query: 32 GSLLAQAKNNSGHSLGRRLSQLGSIPHTPRVNGKIPNLDNATLDHERLSERLGNYGLAEF 91
GSLLAQAKNNSGHSLGRRLSQLGSIPHTPRVNGKIPNLDNATLDHERLSERLGNYGLAEF
Sbjct: 32 GSLLAQAKNNSGHSLGRRLSQLGSIPHTPRVNGKIPNLDNATLDHERLSERLGNYGLAEF 91
Query: 92 QIEGDGNCQFRALADQIFRNPDYHKHVRKLVMKQLKEFRKQYESYVPMEYKVYLKKMKRS 151
QIEGDGNCQFRALADQIFRNPDYHKHVRKLVMKQLKEFRKQYESYVPMEYKVYLKKMKRS
Sbjct: 92 QIEGDGNCQFRALADQIFRNPDYHKHVRKLVMKQLKEFRKQYESYVPMEYKVYLKKMKRS 151
Query: 152 GEWGDHLTLQAAADRFGAKICLLTSFRDTCLIEIVPRDVTPTRELWLSFWCEVHYNSLYA 211
GEWGDHLTLQAAADRFGAKICLLTSFRDTCLIEIVPRDVTPTRELWLSFWCEVHYNSLYA
Sbjct: 152 GEWGDHLTLQAAADRFGAKICLLTSFRDTCLIEIVPRDVTPTRELWLSFWCEVHYNSLYA 211
Query: 212 XXXXXXXXXXXXHWLF 227
HWLF
Sbjct: 212 TDDLLTRKTKKKHWLF 227
>Os02g0168600 Ovarian tumour, otubain domain containing protein
Length = 224
Score = 334 bits (856), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 158/196 (80%), Positives = 169/196 (86%), Gaps = 1/196 (0%)
Query: 32 GSLLAQAKNNSGHSLGRRLSQLGSIPHTPRVNGKIPNLDNATLDHERLSERLGNYGLAEF 91
G+LL +AKN SG SLG+RLS L SIPHTPRVNG+IP+++NAT+DHE L ERLG YGLAEF
Sbjct: 30 GTLLTEAKN-SGRSLGKRLSHLDSIPHTPRVNGQIPDVNNATIDHETLLERLGTYGLAEF 88
Query: 92 QIEGDGNCQFRALADQIFRNPDYHKHVRKLVMKQLKEFRKQYESYVPMEYKVYLKKMKRS 151
QIEGDGNCQFRALADQIFRNPDYHKHVRK V+KQLKEFRK YE YVPMEYKVYLKKMKRS
Sbjct: 89 QIEGDGNCQFRALADQIFRNPDYHKHVRKSVVKQLKEFRKHYEGYVPMEYKVYLKKMKRS 148
Query: 152 GEWGDHLTLQAAADRFGAKICLLTSFRDTCLIEIVPRDVTPTRELWLSFWCEVHYNSLYA 211
GEWGDH+TLQAAADRF AKICLLTSFRDTCLIEIVPR TPT+ELWLSFW EVHYNSLYA
Sbjct: 149 GEWGDHVTLQAAADRFAAKICLLTSFRDTCLIEIVPRGATPTKELWLSFWSEVHYNSLYA 208
Query: 212 XXXXXXXXXXXXHWLF 227
HWLF
Sbjct: 209 TEDLPNRKTRKKHWLF 224
>Os03g0859800 Ovarian tumour, otubain domain containing protein
Length = 302
Score = 207 bits (528), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 124/165 (75%)
Query: 46 LGRRLSQLGSIPHTPRVNGKIPNLDNATLDHERLSERLGNYGLAEFQIEGDGNCQFRALA 105
+G+RL + IPH P+ NG IP++D A DH+RL RL Y LAE ++EGDGNCQFRAL+
Sbjct: 120 VGKRLHDMIPIPHVPKTNGDIPSVDEAFSDHQRLLHRLELYDLAELKVEGDGNCQFRALS 179
Query: 106 DQIFRNPDYHKHVRKLVMKQLKEFRKQYESYVPMEYKVYLKKMKRSGEWGDHLTLQAAAD 165
DQ +R ++H+ VR+ ++KQL+ + + Y YVPM+Y+ YLKKM ++GEWGDH+TLQAAAD
Sbjct: 180 DQFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNGEWGDHVTLQAAAD 239
Query: 166 RFGAKICLLTSFRDTCLIEIVPRDVTPTRELWLSFWCEVHYNSLY 210
+G KI +LTSFRDTC IEI+P R + LSFW EVHYNS+Y
Sbjct: 240 SYGVKIFILTSFRDTCYIEILPVVQKSERVICLSFWAEVHYNSIY 284
>Os03g0589300 Ovarian tumour, otubain domain containing protein
Length = 475
Score = 197 bits (501), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 89/165 (53%), Positives = 122/165 (73%)
Query: 47 GRRLSQLGSIPHTPRVNGKIPNLDNATLDHERLSERLGNYGLAEFQIEGDGNCQFRALAD 106
G++L+ + IPH P++NG IP+ A DH+RL +RL Y LAE +++GD NCQFRAL+D
Sbjct: 307 GKKLTNMIPIPHIPKINGDIPSAIEAFADHQRLLDRLVLYDLAEVKVKGDRNCQFRALSD 366
Query: 107 QIFRNPDYHKHVRKLVMKQLKEFRKQYESYVPMEYKVYLKKMKRSGEWGDHLTLQAAADR 166
Q++ ++H+ VR+ V+KQL+ + + Y YVPM+Y+ YLKKM GEWGDH+TLQAAAD
Sbjct: 367 QMYHTTEHHRFVRQQVVKQLESYPEIYAGYVPMDYREYLKKMTEDGEWGDHVTLQAAADL 426
Query: 167 FGAKICLLTSFRDTCLIEIVPRDVTPTRELWLSFWCEVHYNSLYA 211
+G KI LLTS RDT IE++P D P E+ +SFW EVHY+S+YA
Sbjct: 427 YGVKITLLTSCRDTFYIEVLPADQKPKGEICISFWAEVHYDSVYA 471
>Os02g0819500 Ovarian tumour, otubain domain containing protein
Length = 213
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 81/106 (76%)
Query: 46 LGRRLSQLGSIPHTPRVNGKIPNLDNATLDHERLSERLGNYGLAEFQIEGDGNCQFRALA 105
+G+R + +PH P++NG+IP++D AT+DHERL+ERL Y L E +++GDGNCQFRAL+
Sbjct: 108 VGKRFYPMVPVPHVPKINGEIPSVDEATMDHERLTERLRLYELVEHKVKGDGNCQFRALS 167
Query: 106 DQIFRNPDYHKHVRKLVMKQLKEFRKQYESYVPMEYKVYLKKMKRS 151
DQ++++PD+H+ VR+ +M QLK R Y+ YVPM Y YL+K+ +
Sbjct: 168 DQLYQSPDHHEFVRQQIMSQLKSNRDAYDGYVPMAYDDYLEKVSHA 213
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,415,105
Number of extensions: 256710
Number of successful extensions: 502
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 5
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)