Os02g0168600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ovarian tumour, otubain domain containing protein.
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Os02g0168600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ovarian tumour, otubain domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.13 | 0.236 | 10.7 | -0.411 | 0.175 | -0.57 | 0.523 | -0.222 | -0.0347 | 8.42 | 7.272 | 87 | -- | -- |
| 25.17 | 0.234 | 10.7 | -0.414 | 0.179 | -0.54 | 0.433 | -- | -0.0364 | 7.97 | 6.571 | 84 | -- | -- |
| 25.48 | 0.235 | 10.7 | -0.422 | 0.155 | -0.553 | -- | 0.0309 | -0.0343 | 7.89 | 7.084 | 128 | -- | -- |
| 25.37 | 0.235 | 10.7 | -0.396 | 0.149 | -0.496 | -- | -- | -0.0373 | 6.85 | 8.117 | 140 | -- | -- |
| 26.22 | 0.238 | 10.7 | -0.391 | -- | -0.487 | -- | 0.0825 | -0.0272 | -- | 8.366 | 171 | -- | -- |
| 28.78 | 0.251 | 10.7 | -0.409 | 0.3 | -- | -0.219 | -- | -0.0616 | 3.01 | -- | -- | -- | -- |
| 28.92 | 0.252 | 10.7 | -0.405 | 0.301 | -- | -- | -- | -0.0604 | 3.21 | -- | -- | -- | -- |
| 26.19 | 0.238 | 10.7 | -0.381 | -- | -0.471 | -- | -- | -0.0319 | -- | 7.22 | 206 | -- | -- |
| 29.47 | 0.253 | 10.7 | -- | 0.126 | -0.467 | -- | -- | 0.00793 | 6.36 | 10.15 | 169 | -- | -- |
| 34.06 | 0.273 | 10.7 | -0.392 | -- | -- | -- | -- | -0.0525 | -- | -- | -- | -- | -- |
| 33.24 | 0.27 | 10.7 | -- | 0.293 | -- | -- | -- | -0.0153 | 3.21 | -- | -- | -- | -- |
| 30.06 | 0.255 | 10.7 | -- | -- | -0.502 | -- | -- | 0.0228 | -- | 8.395 | 276 | -- | -- |
| 38.11 | 0.288 | 10.7 | -- | -- | -- | -- | -- | -0.00904 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.79 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 13 |
| 2 | 23.89 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 9 | 24.21 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 12 |
| 14 | 24.26 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 20 | 24.29 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 6 |
| 23 | 24.32 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 25 | 24.34 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 10 |
| 27 | 24.34 | radiation | 1 | 270 | > th | dose dependent | sin | 4 | NA |
| 33 | 24.36 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 8 |
| 41 | 24.39 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 46 | 24.41 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 54 | 24.46 | radiation | 1 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 83 | 24.53 | radiation | 40 | 270 | < th | dose dependent | sin | 4 | NA |
| 84 | 24.53 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 91 | 24.56 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 7 |
| 98 | 24.59 | radiation | 20 | 270 | < th | dose independent | sin | 5 | NA |
| 99 | 24.59 | temperature | 25 | 720 | > th | dose independent | rect. | 2 | 11 |
| 102 | 24.60 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 8 |
| 141 | 24.67 | radiation | 30 | 90 | < th | dose independent | rect. | 5 | 6 |
| 143 | 24.67 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 154 | 24.70 | temperature | 25 | 720 | > th | dose independent | sin | 5 | NA |
| 155 | 24.70 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 156 | 24.70 | radiation | 30 | 10 | < th | dose independent | rect. | 5 | 10 |
| 177 | 24.74 | radiation | 1 | 10 | > th | dose dependent | rect. | 8 | 11 |
| 209 | 24.76 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 14 |
| 224 | 24.76 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 282 | 24.85 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 10 |
| 298 | 24.87 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 377 | 24.94 | radiation | 40 | 270 | < th | dose independent | sin | 11 | NA |
| 439 | 25.00 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 17 |
| 446 | 25.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 464 | 25.03 | radiation | 30 | 10 | < th | dose independent | rect. | 5 | 7 |
| 466 | 25.03 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 19 |
| 515 | 25.07 | temperature | 25 | 720 | < th | dose independent | sin | 3 | NA |
| 523 | 25.08 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 12 |
| 550 | 25.10 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 740 | 25.21 | radiation | 10 | 90 | > th | dose dependent | no | NA | NA |
| 821 | 25.22 | radiation | 40 | 270 | > th | dose independent | sin | 8 | NA |
| 826 | 25.22 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 16 |
| 829 | 25.22 | radiation | 1 | 10 | > th | dose dependent | sin | 22 | NA |
| 838 | 25.23 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 871 | 25.23 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 942 | 25.27 | radiation | 40 | 10 | < th | dose independent | sin | 4 | NA |
| 975 | 25.28 | radiation | 40 | 270 | < th | dose independent | rect. | 12 | 23 |