BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0168600 Os02g0168600|AK067291
(224 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0168600 Ovarian tumour, otubain domain containing protein 432 e-121
Os06g0669800 Ovarian tumour, otubain domain containing protein 358 2e-99
Os03g0859800 Ovarian tumour, otubain domain containing protein 221 3e-58
Os03g0589300 Ovarian tumour, otubain domain containing protein 202 1e-52
Os02g0819500 Ovarian tumour, otubain domain containing protein 125 2e-29
>Os02g0168600 Ovarian tumour, otubain domain containing protein
Length = 224
Score = 432 bits (1110), Expect = e-121, Method: Compositional matrix adjust.
Identities = 207/224 (92%), Positives = 207/224 (92%)
Query: 1 MSEQQDHAXXXXXXXXXXXXXXXXXDVTVGTLLTEAKNSGRSLGKRLSHLDSIPHTPRVN 60
MSEQQDHA DVTVGTLLTEAKNSGRSLGKRLSHLDSIPHTPRVN
Sbjct: 1 MSEQQDHASKSSCSSLSTSTQESEEDVTVGTLLTEAKNSGRSLGKRLSHLDSIPHTPRVN 60
Query: 61 GQIPDVNNATIDHETLLERLGTYGLAEFQIEGDGNCQFRALADQIFRNPDYHKHVRKSVV 120
GQIPDVNNATIDHETLLERLGTYGLAEFQIEGDGNCQFRALADQIFRNPDYHKHVRKSVV
Sbjct: 61 GQIPDVNNATIDHETLLERLGTYGLAEFQIEGDGNCQFRALADQIFRNPDYHKHVRKSVV 120
Query: 121 KQLKEFRKHYEGYVPMEYKVYLKKMKRSGEWGDHVTLQAAADRFAAKICLLTSFRDTCLI 180
KQLKEFRKHYEGYVPMEYKVYLKKMKRSGEWGDHVTLQAAADRFAAKICLLTSFRDTCLI
Sbjct: 121 KQLKEFRKHYEGYVPMEYKVYLKKMKRSGEWGDHVTLQAAADRFAAKICLLTSFRDTCLI 180
Query: 181 EIVPRGATPTKELWLSFWSEVHYNSLYATEDLPNRKTRKKHWLF 224
EIVPRGATPTKELWLSFWSEVHYNSLYATEDLPNRKTRKKHWLF
Sbjct: 181 EIVPRGATPTKELWLSFWSEVHYNSLYATEDLPNRKTRKKHWLF 224
>Os06g0669800 Ovarian tumour, otubain domain containing protein
Length = 227
Score = 358 bits (919), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 167/199 (83%), Positives = 182/199 (91%), Gaps = 1/199 (0%)
Query: 27 VTVGTLLTEAKN-SGRSLGKRLSHLDSIPHTPRVNGQIPDVNNATIDHETLLERLGTYGL 85
+T+G+LL +AKN SG SLG+RLS L SIPHTPRVNG+IP+++NAT+DHE L ERLG YGL
Sbjct: 29 ITIGSLLAQAKNNSGHSLGRRLSQLGSIPHTPRVNGKIPNLDNATLDHERLSERLGNYGL 88
Query: 86 AEFQIEGDGNCQFRALADQIFRNPDYHKHVRKSVVKQLKEFRKHYEGYVPMEYKVYLKKM 145
AEFQIEGDGNCQFRALADQIFRNPDYHKHVRK V+KQLKEFRK YE YVPMEYKVYLKKM
Sbjct: 89 AEFQIEGDGNCQFRALADQIFRNPDYHKHVRKLVMKQLKEFRKQYESYVPMEYKVYLKKM 148
Query: 146 KRSGEWGDHVTLQAAADRFAAKICLLTSFRDTCLIEIVPRGATPTKELWLSFWSEVHYNS 205
KRSGEWGDH+TLQAAADRF AKICLLTSFRDTCLIEIVPR TPT+ELWLSFW EVHYNS
Sbjct: 149 KRSGEWGDHLTLQAAADRFGAKICLLTSFRDTCLIEIVPRDVTPTRELWLSFWCEVHYNS 208
Query: 206 LYATEDLPNRKTRKKHWLF 224
LYAT+DL RKT+KKHWLF
Sbjct: 209 LYATDDLLTRKTKKKHWLF 227
>Os03g0859800 Ovarian tumour, otubain domain containing protein
Length = 302
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 100/180 (55%), Positives = 132/180 (73%)
Query: 43 LGKRLSHLDSIPHTPRVNGQIPDVNNATIDHETLLERLGTYGLAEFQIEGDGNCQFRALA 102
+GKRL + IPH P+ NG IP V+ A DH+ LL RL Y LAE ++EGDGNCQFRAL+
Sbjct: 120 VGKRLHDMIPIPHVPKTNGDIPSVDEAFSDHQRLLHRLELYDLAELKVEGDGNCQFRALS 179
Query: 103 DQIFRNPDYHKHVRKSVVKQLKEFRKHYEGYVPMEYKVYLKKMKRSGEWGDHVTLQAAAD 162
DQ +R ++H+ VR+ +VKQL+ + + Y GYVPM+Y+ YLKKM ++GEWGDHVTLQAAAD
Sbjct: 180 DQFYRTTEHHRFVRQQIVKQLESYPEIYAGYVPMDYREYLKKMIKNGEWGDHVTLQAAAD 239
Query: 163 RFAAKICLLTSFRDTCLIEIVPRGATPTKELWLSFWSEVHYNSLYATEDLPNRKTRKKHW 222
+ KI +LTSFRDTC IEI+P + + LSFW+EVHYNS+Y +LP + ++K W
Sbjct: 240 SYGVKIFILTSFRDTCYIEILPVVQKSERVICLSFWAEVHYNSIYPEGELPVMENKRKRW 299
>Os03g0589300 Ovarian tumour, otubain domain containing protein
Length = 475
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/169 (55%), Positives = 125/169 (73%), Gaps = 1/169 (0%)
Query: 40 GRSLGKRLSHLDSIPHTPRVNGQIPDVNNATIDHETLLERLGTYGLAEFQIEGDGNCQFR 99
GR+ GK+L+++ IPH P++NG IP A DH+ LL+RL Y LAE +++GD NCQFR
Sbjct: 304 GRA-GKKLTNMIPIPHIPKINGDIPSAIEAFADHQRLLDRLVLYDLAEVKVKGDRNCQFR 362
Query: 100 ALADQIFRNPDYHKHVRKSVVKQLKEFRKHYEGYVPMEYKVYLKKMKRSGEWGDHVTLQA 159
AL+DQ++ ++H+ VR+ VVKQL+ + + Y GYVPM+Y+ YLKKM GEWGDHVTLQA
Sbjct: 363 ALSDQMYHTTEHHRFVRQQVVKQLESYPEIYAGYVPMDYREYLKKMTEDGEWGDHVTLQA 422
Query: 160 AADRFAAKICLLTSFRDTCLIEIVPRGATPTKELWLSFWSEVHYNSLYA 208
AAD + KI LLTS RDT IE++P P E+ +SFW+EVHY+S+YA
Sbjct: 423 AADLYGVKITLLTSCRDTFYIEVLPADQKPKGEICISFWAEVHYDSVYA 471
>Os02g0819500 Ovarian tumour, otubain domain containing protein
Length = 213
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 79/106 (74%)
Query: 43 LGKRLSHLDSIPHTPRVNGQIPDVNNATIDHETLLERLGTYGLAEFQIEGDGNCQFRALA 102
+GKR + +PH P++NG+IP V+ AT+DHE L ERL Y L E +++GDGNCQFRAL+
Sbjct: 108 VGKRFYPMVPVPHVPKINGEIPSVDEATMDHERLTERLRLYELVEHKVKGDGNCQFRALS 167
Query: 103 DQIFRNPDYHKHVRKSVVKQLKEFRKHYEGYVPMEYKVYLKKMKRS 148
DQ++++PD+H+ VR+ ++ QLK R Y+GYVPM Y YL+K+ +
Sbjct: 168 DQLYQSPDHHEFVRQQIMSQLKSNRDAYDGYVPMAYDDYLEKVSHA 213
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,205,568
Number of extensions: 288807
Number of successful extensions: 576
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 575
Number of HSP's successfully gapped: 5
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)